Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08730

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08725 and MMP_RS08730 are separated by 41 nucleotidesMMP_RS08730 and MMP_RS08735 are separated by 99 nucleotidesMMP_RS08735 and MMP_RS08740 are separated by 187 nucleotides MMP_RS08725: MMP_RS08725 - Ni/Fe hydrogenase subunit alpha, at 1,634,132 to 1,635,388 _RS08725 MMP_RS08730: MMP_RS08730 - F420-non-reducing hydrogenase subunit, at 1,635,430 to 1,636,296 _RS08730 MMP_RS08735: MMP_RS08735 - hydrogenase iron-sulfur subunit, at 1,636,396 to 1,636,800 _RS08735 MMP_RS08740: MMP_RS08740 - CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein, at 1,636,988 to 1,638,964 _RS08740 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1634.721 kb on - strand, within MMP_RS08725at 1635.324 kb on + strandat 1635.424 kb on + strandat 1635.892 kb on + strandat 1635.999 kb on + strandat 1636.112 kb on + strandat 1636.783 kb on + strandat 1637.178 kb on - strandat 1637.198 kb on - strandat 1637.199 kb on + strandat 1637.199 kb on + strandat 1637.217 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,634,721 - MMP_RS08725 0.47 -3.8
1,635,324 + -1.7
1,635,424 + -5.0
1,635,892 + -4.1
1,635,999 + -3.7
1,636,112 + -4.8
1,636,783 + -3.1
1,637,178 - -2.9
1,637,198 - -1.1
1,637,199 + -1.5
1,637,199 + -1.9
1,637,217 + -3.5

Or see this region's nucleotide sequence