Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08545

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08535 and MMP_RS08540 are separated by 52 nucleotidesMMP_RS08540 and MMP_RS08545 are separated by 159 nucleotidesMMP_RS08545 and MMP_RS08550 are separated by 85 nucleotidesMMP_RS08550 and MMP_RS08555 overlap by 11 nucleotidesMMP_RS08555 and MMP_RS08560 overlap by 4 nucleotides MMP_RS08535: MMP_RS08535 - bis-aminopropyl spermidine synthase family protein, at 1,601,691 to 1,602,863 _RS08535 MMP_RS08540: MMP_RS08540 - 30S ribosomal protein S8e, at 1,602,916 to 1,603,302 _RS08540 MMP_RS08545: MMP_RS08545 - aspartate carbamoyltransferase, at 1,603,462 to 1,604,370 _RS08545 MMP_RS08550: MMP_RS08550 - DUF2304 domain-containing protein, at 1,604,456 to 1,604,815 _RS08550 MMP_RS08555: MMP_RS08555 - hypothetical protein, at 1,604,805 to 1,605,002 _RS08555 MMP_RS08560: MMP_RS08560 - precorrin-4 C(11)-methyltransferase, at 1,604,999 to 1,605,763 _RS08560 Position (kb) 1603 1604 1605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1602.504 kb on - strand, within MMP_RS08535at 1602.567 kb on + strand, within MMP_RS08535at 1602.582 kb on - strand, within MMP_RS08535at 1602.769 kb on - strandat 1602.903 kb on - strandat 1602.917 kb on - strandat 1602.918 kb on + strandat 1602.928 kb on - strandat 1602.929 kb on + strandat 1603.073 kb on + strandat 1603.230 kb on - strandat 1603.352 kb on - strandat 1603.355 kb on + strandat 1603.356 kb on - strandat 1603.356 kb on - strandat 1603.357 kb on + strandat 1603.386 kb on - strandat 1603.391 kb on - strandat 1603.392 kb on + strandat 1603.392 kb on + strandat 1603.408 kb on + strandat 1603.665 kb on + strandat 1603.902 kb on - strandat 1604.397 kb on - strandat 1604.400 kb on + strandat 1604.409 kb on + strandat 1604.410 kb on - strandat 1604.411 kb on + strandat 1604.413 kb on + strandat 1604.414 kb on - strandat 1604.421 kb on + strandat 1604.427 kb on - strandat 1604.428 kb on + strandat 1604.428 kb on + strandat 1604.432 kb on - strandat 1604.433 kb on + strandat 1604.433 kb on + strandat 1604.433 kb on + strandat 1604.433 kb on + strandat 1604.436 kb on - strandat 1604.437 kb on + strandat 1604.437 kb on + strandat 1604.842 kb on + strand, within MMP_RS08555at 1604.926 kb on - strand, within MMP_RS08555at 1604.928 kb on - strand, within MMP_RS08555at 1604.929 kb on + strand, within MMP_RS08555at 1605.073 kb on - strandat 1605.273 kb on - strandat 1605.287 kb on + strandat 1605.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,602,504 - MMP_RS08535 0.69 +0.6
1,602,567 + MMP_RS08535 0.75 +1.3
1,602,582 - MMP_RS08535 0.76 +0.2
1,602,769 - -1.0
1,602,903 - -0.7
1,602,917 - -0.0
1,602,918 + +0.2
1,602,928 - -1.0
1,602,929 + +0.2
1,603,073 + -2.7
1,603,230 - -1.3
1,603,352 - -3.2
1,603,355 + -1.4
1,603,356 - -2.0
1,603,356 - -3.7
1,603,357 + -1.7
1,603,386 - +0.1
1,603,391 - -4.5
1,603,392 + -2.4
1,603,392 + -1.5
1,603,408 + -0.8
1,603,665 + -3.7
1,603,902 - -3.0
1,604,397 - -0.8
1,604,400 + +0.2
1,604,409 + -0.1
1,604,410 - +1.0
1,604,411 + -4.5
1,604,413 + -1.2
1,604,414 - +0.7
1,604,421 + +0.1
1,604,427 - +0.3
1,604,428 + -0.1
1,604,428 + -0.5
1,604,432 - +0.7
1,604,433 + +0.8
1,604,433 + +0.7
1,604,433 + -0.2
1,604,433 + -0.3
1,604,436 - +1.2
1,604,437 + +0.6
1,604,437 + +0.6
1,604,842 + MMP_RS08555 0.19 +0.6
1,604,926 - MMP_RS08555 0.61 +0.6
1,604,928 - MMP_RS08555 0.62 +0.4
1,604,929 + MMP_RS08555 0.63 +0.2
1,605,073 - -3.2
1,605,273 - -2.7
1,605,287 + -1.2
1,605,287 + -1.6

Or see this region's nucleotide sequence