Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08535 and MMP_RS08540 are separated by 52 nucleotides MMP_RS08540 and MMP_RS08545 are separated by 159 nucleotides
MMP_RS08535: MMP_RS08535 - bis-aminopropyl spermidine synthase family protein, at 1,601,691 to 1,602,863
_RS08535
MMP_RS08540: MMP_RS08540 - 30S ribosomal protein S8e, at 1,602,916 to 1,603,302
_RS08540
MMP_RS08545: MMP_RS08545 - aspartate carbamoyltransferase, at 1,603,462 to 1,604,370
_RS08545
Position (kb)
1602
1603
1604 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1602.002 kb on - strand, within MMP_RS08535 at 1602.003 kb on + strand, within MMP_RS08535 at 1602.009 kb on + strand, within MMP_RS08535 at 1602.009 kb on + strand, within MMP_RS08535 at 1602.303 kb on + strand, within MMP_RS08535 at 1602.353 kb on - strand, within MMP_RS08535 at 1602.354 kb on + strand, within MMP_RS08535 at 1602.354 kb on + strand, within MMP_RS08535 at 1602.436 kb on + strand, within MMP_RS08535 at 1602.436 kb on + strand, within MMP_RS08535 at 1602.437 kb on - strand, within MMP_RS08535 at 1602.438 kb on + strand, within MMP_RS08535 at 1602.438 kb on + strand, within MMP_RS08535 at 1602.438 kb on + strand, within MMP_RS08535 at 1602.504 kb on - strand, within MMP_RS08535 at 1602.567 kb on + strand, within MMP_RS08535 at 1602.582 kb on - strand, within MMP_RS08535 at 1602.769 kb on - strand at 1602.903 kb on - strand at 1602.917 kb on - strand at 1602.918 kb on + strand at 1602.928 kb on - strand at 1602.929 kb on + strand at 1603.073 kb on + strand at 1603.230 kb on - strand at 1603.352 kb on - strand at 1603.355 kb on + strand at 1603.356 kb on - strand at 1603.356 kb on - strand at 1603.357 kb on + strand at 1603.386 kb on - strand at 1603.391 kb on - strand at 1603.392 kb on + strand at 1603.392 kb on + strand at 1603.408 kb on + strand at 1603.665 kb on + strand at 1603.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,602,002 - MMP_RS08535 0.27 -0.3 1,602,003 + MMP_RS08535 0.27 +0.3 1,602,009 + MMP_RS08535 0.27 +0.5 1,602,009 + MMP_RS08535 0.27 +1.8 1,602,303 + MMP_RS08535 0.52 -0.5 1,602,353 - MMP_RS08535 0.56 +0.4 1,602,354 + MMP_RS08535 0.57 +1.0 1,602,354 + MMP_RS08535 0.57 -0.9 1,602,436 + MMP_RS08535 0.64 +0.0 1,602,436 + MMP_RS08535 0.64 -4.0 1,602,437 - MMP_RS08535 0.64 +0.0 1,602,438 + MMP_RS08535 0.64 +0.8 1,602,438 + MMP_RS08535 0.64 -0.1 1,602,438 + MMP_RS08535 0.64 -0.3 1,602,504 - MMP_RS08535 0.69 +0.6 1,602,567 + MMP_RS08535 0.75 +1.3 1,602,582 - MMP_RS08535 0.76 +0.2 1,602,769 - -1.0 1,602,903 - -0.7 1,602,917 - -0.0 1,602,918 + +0.2 1,602,928 - -1.0 1,602,929 + +0.2 1,603,073 + -2.7 1,603,230 - -1.3 1,603,352 - -3.2 1,603,355 + -1.4 1,603,356 - -2.0 1,603,356 - -3.7 1,603,357 + -1.7 1,603,386 - +0.1 1,603,391 - -4.5 1,603,392 + -2.4 1,603,392 + -1.5 1,603,408 + -0.8 1,603,665 + -3.7 1,603,902 - -3.0
Or see this region's nucleotide sequence