Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08465

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08460 and MMP_RS08465 are separated by 54 nucleotidesMMP_RS08465 and MMP_RS08470 are separated by 4 nucleotides MMP_RS08460: MMP_RS08460 - proteasome-activating nucleotidase, at 1,587,504 to 1,588,727 _RS08460 MMP_RS08465: MMP_RS08465 - NAD(P)-binding protein, at 1,588,782 to 1,589,972 _RS08465 MMP_RS08470: MMP_RS08470 - ATP-binding cassette domain-containing protein, at 1,589,977 to 1,591,038 _RS08470 Position (kb) 1588 1589 1590Strain fitness (log2 ratio) -3 -2 -1 0 1at 1588.242 kb on + strand, within MMP_RS08460at 1588.367 kb on + strand, within MMP_RS08460at 1588.529 kb on + strand, within MMP_RS08460at 1588.729 kb on - strandat 1589.275 kb on - strandat 1589.453 kb on - strandat 1589.456 kb on + strandat 1589.461 kb on - strandat 1589.726 kb on + strandat 1590.013 kb on - strandat 1590.020 kb on + strandat 1590.073 kb on - strandat 1590.202 kb on + strand, within MMP_RS08470at 1590.226 kb on - strand, within MMP_RS08470at 1590.454 kb on + strand, within MMP_RS08470at 1590.592 kb on - strand, within MMP_RS08470at 1590.593 kb on + strand, within MMP_RS08470at 1590.692 kb on + strand, within MMP_RS08470at 1590.812 kb on + strand, within MMP_RS08470at 1590.841 kb on - strand, within MMP_RS08470at 1590.842 kb on + strand, within MMP_RS08470at 1590.842 kb on + strand, within MMP_RS08470at 1590.862 kb on - strand, within MMP_RS08470at 1590.947 kb on + strandat 1590.950 kb on - strandat 1590.951 kb on + strandat 1590.970 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,588,242 + MMP_RS08460 0.60 +0.5
1,588,367 + MMP_RS08460 0.71 -2.2
1,588,529 + MMP_RS08460 0.84 -0.1
1,588,729 - -0.9
1,589,275 - -0.7
1,589,453 - -2.5
1,589,456 + -3.7
1,589,461 - -0.4
1,589,726 + +0.6
1,590,013 - +0.6
1,590,020 + +0.4
1,590,073 - +0.4
1,590,202 + MMP_RS08470 0.21 -0.1
1,590,226 - MMP_RS08470 0.23 -0.2
1,590,454 + MMP_RS08470 0.45 +0.4
1,590,592 - MMP_RS08470 0.58 +1.0
1,590,593 + MMP_RS08470 0.58 +0.7
1,590,692 + MMP_RS08470 0.67 -0.2
1,590,812 + MMP_RS08470 0.79 -0.5
1,590,841 - MMP_RS08470 0.81 +1.2
1,590,842 + MMP_RS08470 0.81 +0.3
1,590,842 + MMP_RS08470 0.81 -0.1
1,590,862 - MMP_RS08470 0.83 -0.2
1,590,947 + +0.3
1,590,950 - -0.6
1,590,951 + +0.3
1,590,970 - +0.6

Or see this region's nucleotide sequence