Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08420

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08415 and MMP_RS08420 are separated by 9 nucleotidesMMP_RS08420 and MMP_RS08425 are separated by 129 nucleotides MMP_RS08415: MMP_RS08415 - radical SAM protein, at 1,579,796 to 1,580,659 _RS08415 MMP_RS08420: MMP_RS08420 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 1,580,669 to 1,581,871 _RS08420 MMP_RS08425: MMP_RS08425 - methionine adenosyltransferase, at 1,582,001 to 1,583,218 _RS08425 Position (kb) 1580 1581 1582Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1579.675 kb on - strandat 1579.676 kb on + strandat 1579.676 kb on + strandat 1579.720 kb on + strandat 1579.720 kb on + strandat 1579.720 kb on + strandat 1579.723 kb on - strandat 1579.724 kb on + strandat 1579.724 kb on + strandat 1579.725 kb on - strandat 1579.725 kb on - strandat 1579.725 kb on - strandat 1579.727 kb on - strandat 1579.727 kb on - strandat 1579.727 kb on - strandat 1579.728 kb on + strandat 1579.728 kb on + strandat 1579.730 kb on - strandat 1579.730 kb on - strandat 1579.733 kb on - strandat 1579.734 kb on + strandat 1579.736 kb on + strandat 1580.269 kb on + strand, within MMP_RS08415at 1580.322 kb on + strand, within MMP_RS08415at 1580.485 kb on + strand, within MMP_RS08415at 1580.774 kb on + strandat 1580.774 kb on + strandat 1580.800 kb on - strandat 1580.959 kb on + strandat 1581.554 kb on + strandat 1581.950 kb on + strandat 1581.957 kb on - strandat 1582.522 kb on - strandat 1582.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,579,675 - +0.2
1,579,676 + -0.1
1,579,676 + +0.2
1,579,720 + +0.4
1,579,720 + +0.1
1,579,720 + +0.9
1,579,723 - +0.5
1,579,724 + +1.0
1,579,724 + +1.0
1,579,725 - +0.1
1,579,725 - -0.3
1,579,725 - +1.1
1,579,727 - +0.3
1,579,727 - +0.4
1,579,727 - -0.0
1,579,728 + +1.2
1,579,728 + +0.5
1,579,730 - +0.2
1,579,730 - -0.3
1,579,733 - -0.1
1,579,734 + -0.1
1,579,736 + +0.8
1,580,269 + MMP_RS08415 0.55 -0.2
1,580,322 + MMP_RS08415 0.61 -0.4
1,580,485 + MMP_RS08415 0.80 +0.7
1,580,774 + -3.1
1,580,774 + -2.7
1,580,800 - -1.1
1,580,959 + -3.7
1,581,554 + -1.5
1,581,950 + +1.3
1,581,957 - -1.8
1,582,522 - -4.0
1,582,677 + -3.2

Or see this region's nucleotide sequence