Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08185

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08180 and MMP_RS08185 are separated by 38 nucleotidesMMP_RS08185 and MMP_RS08190 are separated by 27 nucleotidesMMP_RS08190 and MMP_RS08195 are separated by 11 nucleotides MMP_RS08180: MMP_RS08180 - cobalamin biosynthesis protein, at 1,540,191 to 1,541,162 _RS08180 MMP_RS08185: MMP_RS08185 - tryptophan--tRNA ligase, at 1,541,201 to 1,542,277 _RS08185 MMP_RS08190: MMP_RS08190 - DUF1743 domain-containing protein, at 1,542,305 to 1,543,210 _RS08190 MMP_RS08195: MMP_RS08195 - hypothetical protein, at 1,543,222 to 1,543,764 _RS08195 Position (kb) 1541 1542 1543Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1540.338 kb on + strandat 1540.407 kb on + strandat 1540.505 kb on - strandat 1540.938 kb on - strandat 1540.988 kb on + strandat 1541.147 kb on + strandat 1541.380 kb on + strandat 1541.388 kb on - strandat 1541.390 kb on - strandat 1541.510 kb on - strandat 1541.747 kb on - strandat 1541.895 kb on - strandat 1541.988 kb on - strandat 1541.991 kb on + strandat 1542.451 kb on - strandat 1542.470 kb on + strandat 1542.591 kb on - strandat 1542.649 kb on - strandat 1542.963 kb on - strandat 1543.179 kb on + strandat 1543.196 kb on - strandat 1543.201 kb on + strandat 1543.223 kb on - strandat 1543.223 kb on - strandat 1543.224 kb on + strandat 1543.224 kb on + strandat 1543.224 kb on + strandat 1543.244 kb on - strandat 1543.244 kb on - strandat 1543.245 kb on + strandat 1543.277 kb on + strand, within MMP_RS08195

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,540,338 + -1.3
1,540,407 + -3.0
1,540,505 - -1.2
1,540,938 - -2.8
1,540,988 + -3.2
1,541,147 + -4.2
1,541,380 + -0.7
1,541,388 - -1.9
1,541,390 - -4.0
1,541,510 - -4.7
1,541,747 - -3.2
1,541,895 - -2.9
1,541,988 - -3.8
1,541,991 + -2.1
1,542,451 - -3.0
1,542,470 + -3.9
1,542,591 - -3.2
1,542,649 - -0.4
1,542,963 - -1.7
1,543,179 + -1.2
1,543,196 - -3.1
1,543,201 + -2.1
1,543,223 - -0.2
1,543,223 - -0.9
1,543,224 + -2.8
1,543,224 + -4.2
1,543,224 + -1.1
1,543,244 - +0.4
1,543,244 - +1.3
1,543,245 + -2.1
1,543,277 + MMP_RS08195 0.10 -1.3

Or see this region's nucleotide sequence