Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08180

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08170 and MMP_RS08175 are separated by 85 nucleotidesMMP_RS08175 and MMP_RS08180 are separated by 0 nucleotidesMMP_RS08180 and MMP_RS08185 are separated by 38 nucleotides MMP_RS08170: MMP_RS08170 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 1,538,219 to 1,539,319 _RS08170 MMP_RS08175: MMP_RS08175 - 7-cyano-7-deazaguanine synthase, at 1,539,405 to 1,540,190 _RS08175 MMP_RS08180: MMP_RS08180 - cobalamin biosynthesis protein, at 1,540,191 to 1,541,162 _RS08180 MMP_RS08185: MMP_RS08185 - tryptophan--tRNA ligase, at 1,541,201 to 1,542,277 _RS08185 Position (kb) 1540 1541 1542Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1539.333 kb on + strandat 1539.352 kb on + strandat 1539.358 kb on + strandat 1539.382 kb on + strandat 1539.465 kb on - strandat 1539.466 kb on + strandat 1539.633 kb on + strand, within MMP_RS08175at 1539.636 kb on + strand, within MMP_RS08175at 1539.681 kb on + strand, within MMP_RS08175at 1539.693 kb on + strand, within MMP_RS08175at 1539.697 kb on + strand, within MMP_RS08175at 1539.698 kb on - strand, within MMP_RS08175at 1539.727 kb on - strand, within MMP_RS08175at 1539.737 kb on - strand, within MMP_RS08175at 1539.753 kb on + strand, within MMP_RS08175at 1539.781 kb on - strand, within MMP_RS08175at 1539.788 kb on - strand, within MMP_RS08175at 1539.901 kb on + strand, within MMP_RS08175at 1540.168 kb on - strandat 1540.169 kb on + strandat 1540.169 kb on + strandat 1540.188 kb on - strandat 1540.192 kb on - strandat 1540.192 kb on - strandat 1540.193 kb on + strandat 1540.197 kb on - strandat 1540.338 kb on + strandat 1540.407 kb on + strandat 1540.505 kb on - strandat 1540.938 kb on - strandat 1540.988 kb on + strandat 1541.147 kb on + strandat 1541.380 kb on + strandat 1541.388 kb on - strandat 1541.390 kb on - strandat 1541.510 kb on - strandat 1541.747 kb on - strandat 1541.895 kb on - strandat 1541.988 kb on - strandat 1541.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,539,333 + -0.0
1,539,352 + +0.3
1,539,358 + -0.1
1,539,382 + -0.6
1,539,465 - -0.1
1,539,466 + -0.3
1,539,633 + MMP_RS08175 0.29 +0.5
1,539,636 + MMP_RS08175 0.29 +0.6
1,539,681 + MMP_RS08175 0.35 +0.4
1,539,693 + MMP_RS08175 0.37 +0.3
1,539,697 + MMP_RS08175 0.37 +0.4
1,539,698 - MMP_RS08175 0.37 +0.2
1,539,727 - MMP_RS08175 0.41 -0.1
1,539,737 - MMP_RS08175 0.42 +1.1
1,539,753 + MMP_RS08175 0.44 -0.2
1,539,781 - MMP_RS08175 0.48 -0.9
1,539,788 - MMP_RS08175 0.49 +1.0
1,539,901 + MMP_RS08175 0.63 -2.3
1,540,168 - +1.0
1,540,169 + +1.6
1,540,169 + +1.4
1,540,188 - +0.8
1,540,192 - -0.0
1,540,192 - -1.4
1,540,193 + +1.0
1,540,197 - +0.9
1,540,338 + -1.3
1,540,407 + -3.0
1,540,505 - -1.2
1,540,938 - -2.8
1,540,988 + -3.2
1,541,147 + -4.2
1,541,380 + -0.7
1,541,388 - -1.9
1,541,390 - -4.0
1,541,510 - -4.7
1,541,747 - -3.2
1,541,895 - -2.9
1,541,988 - -3.8
1,541,991 + -2.1

Or see this region's nucleotide sequence