Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08135 and MMP_RS08140 are separated by 123 nucleotides MMP_RS08140 and MMP_RS08145 overlap by 4 nucleotides MMP_RS08145 and MMP_RS08150 are separated by 35 nucleotides MMP_RS08150 and MMP_RS08155 are separated by 102 nucleotides
MMP_RS08135: MMP_RS08135 - arginine decarboxylase pyruvoyl-dependent, at 1,532,982 to 1,533,476
_RS08135
MMP_RS08140: MMP_RS08140 - adenosylmethionine decarboxylase, at 1,533,600 to 1,533,968
_RS08140
MMP_RS08145: MMP_RS08145 - polyamine aminopropyltransferase, at 1,533,965 to 1,534,807
_RS08145
MMP_RS08150: MMP_RS08150 - agmatinase, at 1,534,843 to 1,535,691
_RS08150
MMP_RS08155: MMP_RS08155 - hypothetical protein, at 1,535,794 to 1,536,036
_RS08155
Position (kb)
1533
1534
1535 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1533.132 kb on + strand at 1533.479 kb on - strand at 1533.480 kb on + strand at 1533.481 kb on - strand at 1533.483 kb on - strand at 1533.484 kb on + strand at 1533.484 kb on + strand at 1533.484 kb on + strand at 1533.484 kb on + strand at 1533.484 kb on + strand at 1533.500 kb on - strand at 1533.501 kb on + strand at 1533.501 kb on + strand at 1533.501 kb on + strand at 1533.506 kb on + strand at 1533.517 kb on - strand at 1533.518 kb on + strand at 1533.518 kb on + strand at 1533.839 kb on + strand at 1533.839 kb on + strand at 1534.035 kb on - strand at 1534.040 kb on - strand at 1534.148 kb on + strand at 1534.152 kb on + strand at 1534.306 kb on + strand at 1534.391 kb on - strand at 1534.392 kb on + strand at 1534.423 kb on + strand at 1534.571 kb on + strand at 1534.588 kb on + strand at 1534.623 kb on - strand at 1534.627 kb on - strand at 1534.669 kb on + strand at 1534.794 kb on + strand at 1535.106 kb on - strand at 1535.176 kb on - strand at 1535.186 kb on - strand at 1535.261 kb on + strand at 1535.263 kb on + strand at 1535.292 kb on + strand at 1535.312 kb on - strand at 1535.322 kb on - strand at 1535.323 kb on + strand at 1535.542 kb on + strand at 1535.544 kb on + strand at 1535.634 kb on - strand at 1535.677 kb on + strand at 1535.693 kb on + strand at 1535.750 kb on - strand at 1535.762 kb on - strand at 1535.763 kb on + strand at 1535.763 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,533,132 + -4.1 1,533,479 - +2.0 1,533,480 + +0.7 1,533,481 - +0.4 1,533,483 - +0.6 1,533,484 + +1.1 1,533,484 + +2.1 1,533,484 + -0.2 1,533,484 + +0.3 1,533,484 + +0.6 1,533,500 - +1.4 1,533,501 + +0.5 1,533,501 + +1.3 1,533,501 + +1.1 1,533,506 + +0.5 1,533,517 - -0.6 1,533,518 + +0.8 1,533,518 + +1.4 1,533,839 + -2.7 1,533,839 + -0.5 1,534,035 - -0.4 1,534,040 - -1.5 1,534,148 + -2.5 1,534,152 + -1.7 1,534,306 + -0.6 1,534,391 - -1.4 1,534,392 + -0.2 1,534,423 + -0.6 1,534,571 + -1.7 1,534,588 + +0.4 1,534,623 - +0.2 1,534,627 - -0.1 1,534,669 + -2.6 1,534,794 + -0.9 1,535,106 - -1.5 1,535,176 - -1.2 1,535,186 - -0.9 1,535,261 + -3.2 1,535,263 + -2.9 1,535,292 + -4.1 1,535,312 - -2.5 1,535,322 - -2.0 1,535,323 + -3.7 1,535,542 + -1.2 1,535,544 + -4.2 1,535,634 - -2.1 1,535,677 + -1.4 1,535,693 + +1.5 1,535,750 - -0.8 1,535,762 - -1.1 1,535,763 + -2.2 1,535,763 + -1.8
Or see this region's nucleotide sequence