Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08140

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08130 and MMP_RS08135 are separated by 181 nucleotidesMMP_RS08135 and MMP_RS08140 are separated by 123 nucleotidesMMP_RS08140 and MMP_RS08145 overlap by 4 nucleotidesMMP_RS08145 and MMP_RS08150 are separated by 35 nucleotides MMP_RS08130: MMP_RS08130 - IGHMBP2 family helicase, at 1,530,899 to 1,532,800 _RS08130 MMP_RS08135: MMP_RS08135 - arginine decarboxylase pyruvoyl-dependent, at 1,532,982 to 1,533,476 _RS08135 MMP_RS08140: MMP_RS08140 - adenosylmethionine decarboxylase, at 1,533,600 to 1,533,968 _RS08140 MMP_RS08145: MMP_RS08145 - polyamine aminopropyltransferase, at 1,533,965 to 1,534,807 _RS08145 MMP_RS08150: MMP_RS08150 - agmatinase, at 1,534,843 to 1,535,691 _RS08150 Position (kb) 1533 1534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1532.677 kb on - strandat 1532.722 kb on + strandat 1532.792 kb on + strandat 1533.132 kb on + strandat 1533.479 kb on - strandat 1533.480 kb on + strandat 1533.481 kb on - strandat 1533.483 kb on - strandat 1533.484 kb on + strandat 1533.484 kb on + strandat 1533.484 kb on + strandat 1533.484 kb on + strandat 1533.484 kb on + strandat 1533.500 kb on - strandat 1533.501 kb on + strandat 1533.501 kb on + strandat 1533.501 kb on + strandat 1533.506 kb on + strandat 1533.517 kb on - strandat 1533.518 kb on + strandat 1533.518 kb on + strandat 1533.839 kb on + strandat 1533.839 kb on + strandat 1534.035 kb on - strandat 1534.040 kb on - strandat 1534.148 kb on + strandat 1534.152 kb on + strandat 1534.306 kb on + strandat 1534.391 kb on - strandat 1534.392 kb on + strandat 1534.423 kb on + strandat 1534.571 kb on + strandat 1534.588 kb on + strandat 1534.623 kb on - strandat 1534.627 kb on - strandat 1534.669 kb on + strandat 1534.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,532,677 - +0.9
1,532,722 + +0.7
1,532,792 + +1.1
1,533,132 + -4.1
1,533,479 - +2.0
1,533,480 + +0.7
1,533,481 - +0.4
1,533,483 - +0.6
1,533,484 + +1.1
1,533,484 + +2.1
1,533,484 + -0.2
1,533,484 + +0.3
1,533,484 + +0.6
1,533,500 - +1.4
1,533,501 + +0.5
1,533,501 + +1.3
1,533,501 + +1.1
1,533,506 + +0.5
1,533,517 - -0.6
1,533,518 + +0.8
1,533,518 + +1.4
1,533,839 + -2.7
1,533,839 + -0.5
1,534,035 - -0.4
1,534,040 - -1.5
1,534,148 + -2.5
1,534,152 + -1.7
1,534,306 + -0.6
1,534,391 - -1.4
1,534,392 + -0.2
1,534,423 + -0.6
1,534,571 + -1.7
1,534,588 + +0.4
1,534,623 - +0.2
1,534,627 - -0.1
1,534,669 + -2.6
1,534,794 + -0.9

Or see this region's nucleotide sequence