Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08115

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08110 and MMP_RS08115 are separated by 130 nucleotidesMMP_RS08115 and MMP_RS08120 are separated by 135 nucleotidesMMP_RS08120 and MMP_RS08125 are separated by 66 nucleotides MMP_RS08110: MMP_RS08110 - tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3, at 1,526,282 to 1,527,904 _RS08110 MMP_RS08115: MMP_RS08115 - nicotinamide-nucleotide adenylyltransferase, at 1,528,035 to 1,528,550 _RS08115 MMP_RS08120: MMP_RS08120 - 30S ribosomal protein S15, at 1,528,686 to 1,529,141 _RS08120 MMP_RS08125: MMP_RS08125 - dihydropteroate synthase-like protein, at 1,529,208 to 1,530,779 _RS08125 Position (kb) 1528 1529Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1527.074 kb on - strandat 1527.182 kb on + strandat 1527.550 kb on + strandat 1527.875 kb on + strandat 1527.928 kb on + strandat 1527.937 kb on - strandat 1527.937 kb on - strandat 1527.938 kb on + strandat 1527.940 kb on + strandat 1527.940 kb on + strandat 1527.952 kb on - strandat 1527.955 kb on + strandat 1527.965 kb on + strandat 1527.997 kb on - strandat 1528.002 kb on + strandat 1528.002 kb on + strandat 1528.035 kb on + strandat 1528.084 kb on - strandat 1528.163 kb on + strandat 1528.229 kb on + strandat 1528.259 kb on + strandat 1528.390 kb on + strandat 1528.390 kb on + strandat 1528.522 kb on - strandat 1528.548 kb on - strandat 1528.562 kb on - strandat 1528.595 kb on - strandat 1528.598 kb on + strandat 1528.599 kb on - strandat 1528.601 kb on - strandat 1528.601 kb on - strandat 1528.681 kb on - strandat 1528.853 kb on - strandat 1528.857 kb on - strandat 1529.068 kb on + strandat 1529.193 kb on - strandat 1529.194 kb on + strandat 1529.205 kb on + strandat 1529.230 kb on - strandat 1529.387 kb on - strandat 1529.475 kb on - strandat 1529.514 kb on - strandat 1529.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,527,074 - +0.3
1,527,182 + -0.8
1,527,550 + -1.7
1,527,875 + -2.2
1,527,928 + -3.1
1,527,937 - -2.2
1,527,937 - +0.4
1,527,938 + -3.1
1,527,940 + -3.1
1,527,940 + -4.1
1,527,952 - -1.0
1,527,955 + -0.3
1,527,965 + -3.0
1,527,997 - -4.5
1,528,002 + -2.1
1,528,002 + -1.9
1,528,035 + -2.6
1,528,084 - -2.5
1,528,163 + -3.5
1,528,229 + -1.7
1,528,259 + -0.8
1,528,390 + -2.7
1,528,390 + -2.9
1,528,522 - -3.8
1,528,548 - -0.1
1,528,562 - -0.3
1,528,595 - -0.6
1,528,598 + -1.8
1,528,599 - -1.1
1,528,601 - -5.3
1,528,601 - -3.7
1,528,681 - -2.7
1,528,853 - -1.7
1,528,857 - -2.7
1,529,068 + -1.1
1,529,193 - -0.4
1,529,194 + +0.2
1,529,205 + -0.1
1,529,230 - +0.7
1,529,387 - -1.3
1,529,475 - -3.2
1,529,514 - -3.1
1,529,550 + -0.1

Or see this region's nucleotide sequence