Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07930

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07920 and MMP_RS07925 are separated by 60 nucleotidesMMP_RS07925 and MMP_RS07930 are separated by 268 nucleotidesMMP_RS07930 and MMP_RS07935 are separated by 30 nucleotidesMMP_RS07935 and MMP_RS07940 are separated by 21 nucleotides MMP_RS07920: MMP_RS07920 - tRNA-Ile, at 1,497,882 to 1,497,956 _RS07920 MMP_RS07925: MMP_RS07925 - haloacid dehalogenase, at 1,498,017 to 1,498,607 _RS07925 MMP_RS07930: MMP_RS07930 - 50S ribosomal protein L3, at 1,498,876 to 1,499,880 _RS07930 MMP_RS07935: MMP_RS07935 - 50S ribosomal protein L4, at 1,499,911 to 1,500,669 _RS07935 MMP_RS07940: MMP_RS07940 - 50S ribosomal protein L23, at 1,500,691 to 1,500,951 _RS07940 Position (kb) 1498 1499 1500Strain fitness (log2 ratio) -2 -1 0 1 2at 1498.074 kb on - strandat 1498.075 kb on + strandat 1498.075 kb on + strandat 1498.141 kb on + strand, within MMP_RS07925at 1498.188 kb on + strand, within MMP_RS07925at 1498.299 kb on - strand, within MMP_RS07925at 1498.300 kb on + strand, within MMP_RS07925at 1498.355 kb on + strand, within MMP_RS07925at 1498.639 kb on - strandat 1498.669 kb on + strandat 1498.704 kb on - strandat 1499.007 kb on + strandat 1499.096 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,498,074 - +0.6
1,498,075 + +0.7
1,498,075 + +0.3
1,498,141 + MMP_RS07925 0.21 +0.4
1,498,188 + MMP_RS07925 0.29 -0.4
1,498,299 - MMP_RS07925 0.48 +1.2
1,498,300 + MMP_RS07925 0.48 +0.3
1,498,355 + MMP_RS07925 0.57 -0.0
1,498,639 - -0.0
1,498,669 + +1.8
1,498,704 - -1.9
1,499,007 + -0.5
1,499,096 - -0.1

Or see this region's nucleotide sequence