Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07825

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07820 and MMP_RS07825 are separated by 51 nucleotidesMMP_RS07825 and MMP_RS07830 are separated by 17 nucleotidesMMP_RS07830 and MMP_RS07835 are separated by 107 nucleotides MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829 _RS07820 MMP_RS07825: MMP_RS07825 - preprotein translocase subunit SecD, at 1,481,881 to 1,483,047 _RS07825 MMP_RS07830: MMP_RS07830 - protein translocase subunit SecF, at 1,483,065 to 1,483,910 _RS07830 MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280 _RS07835 Position (kb) 1481 1482 1483 1484Strain fitness (log2 ratio) -3 -2 -1 0 1at 1480.958 kb on - strand, within MMP_RS07820at 1481.109 kb on - strand, within MMP_RS07820at 1481.209 kb on + strand, within MMP_RS07820at 1481.231 kb on + strand, within MMP_RS07820at 1481.399 kb on + strand, within MMP_RS07820at 1481.551 kb on - strand, within MMP_RS07820at 1481.668 kb on - strand, within MMP_RS07820at 1481.744 kb on + strandat 1481.758 kb on + strandat 1481.850 kb on - strandat 1481.851 kb on + strandat 1481.851 kb on + strandat 1481.851 kb on + strandat 1481.860 kb on + strandat 1481.860 kb on + strandat 1481.882 kb on - strandat 1481.882 kb on - strandat 1481.883 kb on + strandat 1481.883 kb on + strandat 1481.893 kb on - strandat 1481.897 kb on - strandat 1481.898 kb on + strandat 1481.898 kb on + strandat 1481.903 kb on + strandat 1482.259 kb on - strandat 1482.388 kb on + strandat 1482.503 kb on + strandat 1483.093 kb on - strandat 1483.792 kb on + strandat 1483.963 kb on + strandat 1483.966 kb on - strandat 1483.982 kb on + strandat 1483.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,480,958 - MMP_RS07820 0.15 -3.0
1,481,109 - MMP_RS07820 0.30 -0.1
1,481,209 + MMP_RS07820 0.39 -1.1
1,481,231 + MMP_RS07820 0.41 -0.7
1,481,399 + MMP_RS07820 0.58 -1.5
1,481,551 - MMP_RS07820 0.73 -0.6
1,481,668 - MMP_RS07820 0.84 -0.9
1,481,744 + -1.8
1,481,758 + -1.0
1,481,850 - +0.2
1,481,851 + -1.2
1,481,851 + -1.2
1,481,851 + -0.1
1,481,860 + -0.5
1,481,860 + -0.6
1,481,882 - +0.2
1,481,882 - +0.3
1,481,883 + +0.0
1,481,883 + +1.1
1,481,893 - -2.1
1,481,897 - +0.1
1,481,898 + -1.6
1,481,898 + +1.4
1,481,903 + -0.7
1,482,259 - -1.9
1,482,388 + -2.1
1,482,503 + -0.6
1,483,093 - -2.1
1,483,792 + +0.5
1,483,963 + +0.5
1,483,966 - +1.1
1,483,982 + -0.8
1,483,994 - +0.1

Or see this region's nucleotide sequence