Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07820 and MMP_RS07825 are separated by 51 nucleotides MMP_RS07825 and MMP_RS07830 are separated by 17 nucleotides MMP_RS07830 and MMP_RS07835 are separated by 107 nucleotides
MMP_RS07820: MMP_RS07820 - UPF0104 family protein, at 1,480,807 to 1,481,829
_RS07820
MMP_RS07825: MMP_RS07825 - preprotein translocase subunit SecD, at 1,481,881 to 1,483,047
_RS07825
MMP_RS07830: MMP_RS07830 - protein translocase subunit SecF, at 1,483,065 to 1,483,910
_RS07830
MMP_RS07835: MMP_RS07835 - TldD/PmbA family protein, at 1,484,018 to 1,485,280
_RS07835
Position (kb)
1481
1482
1483
1484 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1480.958 kb on - strand, within MMP_RS07820 at 1481.109 kb on - strand, within MMP_RS07820 at 1481.209 kb on + strand, within MMP_RS07820 at 1481.231 kb on + strand, within MMP_RS07820 at 1481.399 kb on + strand, within MMP_RS07820 at 1481.551 kb on - strand, within MMP_RS07820 at 1481.668 kb on - strand, within MMP_RS07820 at 1481.744 kb on + strand at 1481.758 kb on + strand at 1481.850 kb on - strand at 1481.851 kb on + strand at 1481.851 kb on + strand at 1481.851 kb on + strand at 1481.860 kb on + strand at 1481.860 kb on + strand at 1481.882 kb on - strand at 1481.882 kb on - strand at 1481.883 kb on + strand at 1481.883 kb on + strand at 1481.893 kb on - strand at 1481.897 kb on - strand at 1481.898 kb on + strand at 1481.898 kb on + strand at 1481.903 kb on + strand at 1482.259 kb on - strand at 1482.388 kb on + strand at 1482.503 kb on + strand at 1483.093 kb on - strand at 1483.792 kb on + strand at 1483.963 kb on + strand at 1483.966 kb on - strand at 1483.982 kb on + strand at 1483.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,480,958 - MMP_RS07820 0.15 -3.0 1,481,109 - MMP_RS07820 0.30 -0.1 1,481,209 + MMP_RS07820 0.39 -1.1 1,481,231 + MMP_RS07820 0.41 -0.7 1,481,399 + MMP_RS07820 0.58 -1.5 1,481,551 - MMP_RS07820 0.73 -0.6 1,481,668 - MMP_RS07820 0.84 -0.9 1,481,744 + -1.8 1,481,758 + -1.0 1,481,850 - +0.2 1,481,851 + -1.2 1,481,851 + -1.2 1,481,851 + -0.1 1,481,860 + -0.5 1,481,860 + -0.6 1,481,882 - +0.2 1,481,882 - +0.3 1,481,883 + +0.0 1,481,883 + +1.1 1,481,893 - -2.1 1,481,897 - +0.1 1,481,898 + -1.6 1,481,898 + +1.4 1,481,903 + -0.7 1,482,259 - -1.9 1,482,388 + -2.1 1,482,503 + -0.6 1,483,093 - -2.1 1,483,792 + +0.5 1,483,963 + +0.5 1,483,966 - +1.1 1,483,982 + -0.8 1,483,994 - +0.1
Or see this region's nucleotide sequence