Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07785

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07780 and MMP_RS07785 are separated by 94 nucleotidesMMP_RS07785 and MMP_RS07790 are separated by 183 nucleotidesMMP_RS07790 and MMP_RS07795 are separated by 18 nucleotides MMP_RS07780: MMP_RS07780 - prephenate dehydrogenase, at 1,473,118 to 1,474,458 _RS07780 MMP_RS07785: MMP_RS07785 - TCP-1/cpn60 chaperonin family protein, at 1,474,553 to 1,476,184 _RS07785 MMP_RS07790: MMP_RS07790 - segregation/condensation protein A, at 1,476,368 to 1,477,036 _RS07790 MMP_RS07795: MMP_RS07795 - site-2 protease family protein, at 1,477,055 to 1,477,657 _RS07795 Position (kb) 1474 1475 1476 1477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1473.653 kb on - strandat 1473.772 kb on + strandat 1473.774 kb on - strandat 1473.806 kb on - strandat 1473.807 kb on + strandat 1473.807 kb on + strandat 1473.880 kb on + strandat 1473.976 kb on + strandat 1474.085 kb on + strandat 1474.223 kb on + strandat 1474.283 kb on - strandat 1474.317 kb on - strandat 1474.463 kb on + strandat 1474.464 kb on - strandat 1474.466 kb on - strandat 1474.486 kb on + strandat 1475.057 kb on - strandat 1475.991 kb on + strandat 1476.162 kb on + strandat 1476.384 kb on + strandat 1476.447 kb on + strand, within MMP_RS07790at 1476.470 kb on + strand, within MMP_RS07790at 1476.540 kb on + strand, within MMP_RS07790at 1476.551 kb on - strand, within MMP_RS07790at 1476.551 kb on - strand, within MMP_RS07790at 1476.554 kb on + strand, within MMP_RS07790at 1476.597 kb on - strand, within MMP_RS07790at 1476.597 kb on - strand, within MMP_RS07790at 1476.598 kb on + strand, within MMP_RS07790at 1476.765 kb on - strand, within MMP_RS07790at 1476.765 kb on - strand, within MMP_RS07790at 1476.766 kb on + strand, within MMP_RS07790at 1476.927 kb on + strand, within MMP_RS07790at 1476.950 kb on - strand, within MMP_RS07790at 1476.950 kb on - strand, within MMP_RS07790at 1477.148 kb on - strand, within MMP_RS07795at 1477.180 kb on - strand, within MMP_RS07795at 1477.184 kb on - strand, within MMP_RS07795

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,473,653 - -3.3
1,473,772 + -0.4
1,473,774 - -1.5
1,473,806 - -2.6
1,473,807 + -3.3
1,473,807 + -2.8
1,473,880 + +0.2
1,473,976 + -2.9
1,474,085 + -3.9
1,474,223 + -0.9
1,474,283 - -2.2
1,474,317 - -3.7
1,474,463 + +0.2
1,474,464 - +0.8
1,474,466 - -0.3
1,474,486 + +0.9
1,475,057 - -1.9
1,475,991 + -4.3
1,476,162 + -1.6
1,476,384 + -0.1
1,476,447 + MMP_RS07790 0.12 -0.6
1,476,470 + MMP_RS07790 0.15 -1.3
1,476,540 + MMP_RS07790 0.26 -0.5
1,476,551 - MMP_RS07790 0.27 +0.1
1,476,551 - MMP_RS07790 0.27 +0.2
1,476,554 + MMP_RS07790 0.28 +0.1
1,476,597 - MMP_RS07790 0.34 +0.0
1,476,597 - MMP_RS07790 0.34 +0.3
1,476,598 + MMP_RS07790 0.34 -0.2
1,476,765 - MMP_RS07790 0.59 -0.2
1,476,765 - MMP_RS07790 0.59 +0.6
1,476,766 + MMP_RS07790 0.59 +0.4
1,476,927 + MMP_RS07790 0.84 -0.8
1,476,950 - MMP_RS07790 0.87 +0.1
1,476,950 - MMP_RS07790 0.87 +0.2
1,477,148 - MMP_RS07795 0.15 +0.9
1,477,180 - MMP_RS07795 0.21 +0.1
1,477,184 - MMP_RS07795 0.21 +0.6

Or see this region's nucleotide sequence