Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07780

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07775 and MMP_RS07780 are separated by 296 nucleotidesMMP_RS07780 and MMP_RS07785 are separated by 94 nucleotides MMP_RS07775: MMP_RS07775 - alanine dehydrogenase, at 1,471,700 to 1,472,821 _RS07775 MMP_RS07780: MMP_RS07780 - prephenate dehydrogenase, at 1,473,118 to 1,474,458 _RS07780 MMP_RS07785: MMP_RS07785 - TCP-1/cpn60 chaperonin family protein, at 1,474,553 to 1,476,184 _RS07785 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1472.194 kb on - strand, within MMP_RS07775at 1472.300 kb on - strand, within MMP_RS07775at 1472.324 kb on - strand, within MMP_RS07775at 1472.512 kb on - strand, within MMP_RS07775at 1472.513 kb on + strand, within MMP_RS07775at 1472.542 kb on + strand, within MMP_RS07775at 1472.771 kb on + strandat 1472.840 kb on + strandat 1472.876 kb on - strandat 1472.879 kb on - strandat 1472.893 kb on + strandat 1473.010 kb on - strandat 1473.010 kb on - strandat 1473.011 kb on + strandat 1473.021 kb on - strandat 1473.083 kb on - strandat 1473.084 kb on + strandat 1473.087 kb on + strandat 1473.087 kb on + strandat 1473.208 kb on - strandat 1473.236 kb on - strandat 1473.277 kb on - strandat 1473.530 kb on - strandat 1473.535 kb on + strandat 1473.535 kb on + strandat 1473.653 kb on - strandat 1473.772 kb on + strandat 1473.774 kb on - strandat 1473.806 kb on - strandat 1473.807 kb on + strandat 1473.807 kb on + strandat 1473.880 kb on + strandat 1473.976 kb on + strandat 1474.085 kb on + strandat 1474.223 kb on + strandat 1474.283 kb on - strandat 1474.317 kb on - strandat 1474.463 kb on + strandat 1474.464 kb on - strandat 1474.466 kb on - strandat 1474.486 kb on + strandat 1475.057 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,472,194 - MMP_RS07775 0.44 +1.4
1,472,300 - MMP_RS07775 0.53 -0.4
1,472,324 - MMP_RS07775 0.56 -0.5
1,472,512 - MMP_RS07775 0.72 -0.5
1,472,513 + MMP_RS07775 0.72 +0.3
1,472,542 + MMP_RS07775 0.75 +1.5
1,472,771 + -0.7
1,472,840 + +1.7
1,472,876 - +0.9
1,472,879 - +0.5
1,472,893 + +1.0
1,473,010 - +0.0
1,473,010 - -0.1
1,473,011 + +0.4
1,473,021 - -0.2
1,473,083 - -0.1
1,473,084 + -1.7
1,473,087 + -1.4
1,473,087 + -2.1
1,473,208 - +1.5
1,473,236 - -2.3
1,473,277 - -2.6
1,473,530 - -1.8
1,473,535 + -5.5
1,473,535 + -0.8
1,473,653 - -3.3
1,473,772 + -0.4
1,473,774 - -1.5
1,473,806 - -2.6
1,473,807 + -3.3
1,473,807 + -2.8
1,473,880 + +0.2
1,473,976 + -2.9
1,474,085 + -3.9
1,474,223 + -0.9
1,474,283 - -2.2
1,474,317 - -3.7
1,474,463 + +0.2
1,474,464 - +0.8
1,474,466 - -0.3
1,474,486 + +0.9
1,475,057 - -1.9

Or see this region's nucleotide sequence