Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07760

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07750 and MMP_RS07755 are separated by 20 nucleotidesMMP_RS07755 and MMP_RS07760 are separated by 132 nucleotidesMMP_RS07760 and MMP_RS07765 are separated by 177 nucleotides MMP_RS07750: MMP_RS07750 - DUF357 domain-containing protein, at 1,466,665 to 1,466,970 _RS07750 MMP_RS07755: MMP_RS07755 - DUF555 domain-containing protein, at 1,466,991 to 1,467,332 _RS07755 MMP_RS07760: MMP_RS07760 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,467,465 to 1,468,760 _RS07760 MMP_RS07765: MMP_RS07765 - sodium:alanine symporter family protein, at 1,468,938 to 1,470,299 _RS07765 Position (kb) 1467 1468 1469Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1466.474 kb on + strandat 1466.534 kb on + strandat 1466.574 kb on + strandat 1466.583 kb on + strandat 1466.583 kb on + strandat 1466.588 kb on - strandat 1466.682 kb on - strandat 1466.683 kb on + strandat 1466.843 kb on - strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.860 kb on + strand, within MMP_RS07750at 1466.862 kb on + strand, within MMP_RS07750at 1466.885 kb on + strand, within MMP_RS07750at 1466.928 kb on - strand, within MMP_RS07750at 1466.934 kb on + strand, within MMP_RS07750at 1466.934 kb on + strand, within MMP_RS07750at 1467.062 kb on + strand, within MMP_RS07755at 1467.203 kb on + strand, within MMP_RS07755at 1467.368 kb on - strandat 1467.427 kb on - strandat 1467.462 kb on + strandat 1468.156 kb on + strandat 1468.242 kb on - strandat 1468.802 kb on - strandat 1468.829 kb on + strandat 1468.829 kb on + strandat 1468.845 kb on + strandat 1468.924 kb on + strandat 1468.965 kb on - strandat 1469.132 kb on + strand, within MMP_RS07765at 1469.361 kb on + strand, within MMP_RS07765at 1469.364 kb on - strand, within MMP_RS07765at 1469.365 kb on + strand, within MMP_RS07765at 1469.566 kb on + strand, within MMP_RS07765at 1469.666 kb on - strand, within MMP_RS07765at 1469.684 kb on - strand, within MMP_RS07765at 1469.699 kb on - strand, within MMP_RS07765at 1469.740 kb on + strand, within MMP_RS07765

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,466,474 + -3.4
1,466,534 + +0.6
1,466,574 + +0.6
1,466,583 + +1.1
1,466,583 + +0.3
1,466,588 - -0.9
1,466,682 - -0.0
1,466,683 + -0.6
1,466,843 - MMP_RS07750 0.58 -1.1
1,466,860 + MMP_RS07750 0.64 -2.3
1,466,860 + MMP_RS07750 0.64 -1.6
1,466,860 + MMP_RS07750 0.64 -2.2
1,466,862 + MMP_RS07750 0.64 -2.1
1,466,885 + MMP_RS07750 0.72 -0.9
1,466,928 - MMP_RS07750 0.86 -0.8
1,466,934 + MMP_RS07750 0.88 +0.0
1,466,934 + MMP_RS07750 0.88 -1.1
1,467,062 + MMP_RS07755 0.21 -2.3
1,467,203 + MMP_RS07755 0.62 -0.9
1,467,368 - +0.7
1,467,427 - +1.0
1,467,462 + +1.3
1,468,156 + -3.4
1,468,242 - -2.9
1,468,802 - -1.9
1,468,829 + +0.4
1,468,829 + +0.3
1,468,845 + -0.3
1,468,924 + +1.2
1,468,965 - +1.3
1,469,132 + MMP_RS07765 0.14 +1.5
1,469,361 + MMP_RS07765 0.31 +1.4
1,469,364 - MMP_RS07765 0.31 +1.1
1,469,365 + MMP_RS07765 0.31 +0.5
1,469,566 + MMP_RS07765 0.46 +1.5
1,469,666 - MMP_RS07765 0.53 +1.1
1,469,684 - MMP_RS07765 0.55 +1.8
1,469,699 - MMP_RS07765 0.56 +2.0
1,469,740 + MMP_RS07765 0.59 +0.7

Or see this region's nucleotide sequence