Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07500

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07490 and MMP_RS07495 are separated by 19 nucleotidesMMP_RS07495 and MMP_RS07500 are separated by 8 nucleotidesMMP_RS07500 and MMP_RS07505 are separated by 4 nucleotidesMMP_RS07505 and MMP_RS07510 are separated by 15 nucleotidesMMP_RS07510 and MMP_RS07515 are separated by 22 nucleotides MMP_RS07490: MMP_RS07490 - hypothetical protein, at 1,421,483 to 1,421,692 _RS07490 MMP_RS07495: MMP_RS07495 - NADH-quinone oxidoreductase subunit H, at 1,421,712 to 1,422,572 _RS07495 MMP_RS07500: MMP_RS07500 - hypothetical protein, at 1,422,581 to 1,422,832 _RS07500 MMP_RS07505: MMP_RS07505 - DUF2104 domain-containing protein, at 1,422,837 to 1,423,136 _RS07505 MMP_RS07510: MMP_RS07510 - DUF1959 domain-containing protein, at 1,423,152 to 1,423,562 _RS07510 MMP_RS07515: MMP_RS07515 - NADH-quinone oxidoreductase subunit B family protein, at 1,423,585 to 1,424,055 _RS07515 Position (kb) 1422 1423Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1421.709 kb on + strandat 1421.711 kb on - strandat 1421.730 kb on - strandat 1421.898 kb on - strandat 1421.898 kb on - strandat 1421.981 kb on + strandat 1422.285 kb on + strandat 1422.302 kb on - strandat 1422.367 kb on - strandat 1422.368 kb on + strandat 1422.556 kb on + strandat 1422.591 kb on + strandat 1422.809 kb on - strandat 1422.969 kb on + strandat 1423.108 kb on + strandat 1423.130 kb on + strandat 1423.560 kb on - strandat 1423.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,421,709 + -3.3
1,421,711 - -4.5
1,421,730 - -3.3
1,421,898 - -4.5
1,421,898 - -4.5
1,421,981 + -2.2
1,422,285 + -3.5
1,422,302 - -4.5
1,422,367 - -2.1
1,422,368 + -2.1
1,422,556 + -4.6
1,422,591 + -3.9
1,422,809 - -2.7
1,422,969 + -2.6
1,423,108 + -2.3
1,423,130 + -4.3
1,423,560 - -5.6
1,423,561 + -3.8

Or see this region's nucleotide sequence