Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07490

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07480 and MMP_RS07485 are separated by 21 nucleotidesMMP_RS07485 and MMP_RS07490 are separated by 9 nucleotidesMMP_RS07490 and MMP_RS07495 are separated by 19 nucleotidesMMP_RS07495 and MMP_RS07500 are separated by 8 nucleotides MMP_RS07480: MMP_RS07480 - EhaG family protein, at 1,420,103 to 1,420,789 _RS07480 MMP_RS07485: MMP_RS07485 - membrane protein, at 1,420,811 to 1,421,473 _RS07485 MMP_RS07490: MMP_RS07490 - hypothetical protein, at 1,421,483 to 1,421,692 _RS07490 MMP_RS07495: MMP_RS07495 - NADH-quinone oxidoreductase subunit H, at 1,421,712 to 1,422,572 _RS07495 MMP_RS07500: MMP_RS07500 - hypothetical protein, at 1,422,581 to 1,422,832 _RS07500 Position (kb) 1421 1422Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1420.808 kb on + strandat 1420.896 kb on - strandat 1421.043 kb on - strandat 1421.044 kb on + strandat 1421.073 kb on - strandat 1421.399 kb on - strandat 1421.542 kb on + strandat 1421.709 kb on + strandat 1421.711 kb on - strandat 1421.730 kb on - strandat 1421.898 kb on - strandat 1421.898 kb on - strandat 1421.981 kb on + strandat 1422.285 kb on + strandat 1422.302 kb on - strandat 1422.367 kb on - strandat 1422.368 kb on + strandat 1422.556 kb on + strandat 1422.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,420,808 + -4.3
1,420,896 - -2.4
1,421,043 - -4.5
1,421,044 + -2.3
1,421,073 - -2.1
1,421,399 - -1.7
1,421,542 + -4.5
1,421,709 + -3.3
1,421,711 - -4.5
1,421,730 - -3.3
1,421,898 - -4.5
1,421,898 - -4.5
1,421,981 + -2.2
1,422,285 + -3.5
1,422,302 - -4.5
1,422,367 - -2.1
1,422,368 + -2.1
1,422,556 + -4.6
1,422,591 + -3.9

Or see this region's nucleotide sequence