Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07480

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07465 and MMP_RS07470 are separated by 8 nucleotidesMMP_RS07470 and MMP_RS07475 are separated by 1 nucleotidesMMP_RS07475 and MMP_RS07480 overlap by 1 nucleotidesMMP_RS07480 and MMP_RS07485 are separated by 21 nucleotidesMMP_RS07485 and MMP_RS07490 are separated by 9 nucleotidesMMP_RS07490 and MMP_RS07495 are separated by 19 nucleotides MMP_RS07465: MMP_RS07465 - DUF2108 domain-containing protein, at 1,419,087 to 1,419,365 _RS07465 MMP_RS07470: MMP_RS07470 - EhaE family protein, at 1,419,374 to 1,419,628 _RS07470 MMP_RS07475: MMP_RS07475 - EhaF family protein, at 1,419,630 to 1,420,103 _RS07475 MMP_RS07480: MMP_RS07480 - EhaG family protein, at 1,420,103 to 1,420,789 _RS07480 MMP_RS07485: MMP_RS07485 - membrane protein, at 1,420,811 to 1,421,473 _RS07485 MMP_RS07490: MMP_RS07490 - hypothetical protein, at 1,421,483 to 1,421,692 _RS07490 MMP_RS07495: MMP_RS07495 - NADH-quinone oxidoreductase subunit H, at 1,421,712 to 1,422,572 _RS07495 Position (kb) 1420 1421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1419.137 kb on + strandat 1419.172 kb on - strandat 1419.309 kb on - strandat 1419.309 kb on - strandat 1419.364 kb on + strandat 1419.517 kb on + strandat 1419.946 kb on + strandat 1420.228 kb on + strandat 1420.245 kb on - strandat 1420.246 kb on + strandat 1420.455 kb on - strandat 1420.456 kb on + strandat 1420.456 kb on + strandat 1420.808 kb on + strandat 1420.896 kb on - strandat 1421.043 kb on - strandat 1421.044 kb on + strandat 1421.073 kb on - strandat 1421.399 kb on - strandat 1421.542 kb on + strandat 1421.709 kb on + strandat 1421.711 kb on - strandat 1421.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,419,137 + -4.0
1,419,172 - -2.3
1,419,309 - -4.3
1,419,309 - -4.7
1,419,364 + -3.8
1,419,517 + -3.6
1,419,946 + -4.5
1,420,228 + -2.1
1,420,245 - -2.5
1,420,246 + -3.0
1,420,455 - -2.3
1,420,456 + -3.7
1,420,456 + -2.9
1,420,808 + -4.3
1,420,896 - -2.4
1,421,043 - -4.5
1,421,044 + -2.3
1,421,073 - -2.1
1,421,399 - -1.7
1,421,542 + -4.5
1,421,709 + -3.3
1,421,711 - -4.5
1,421,730 - -3.3

Or see this region's nucleotide sequence