Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07465

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07450 and MMP_RS07455 overlap by 14 nucleotidesMMP_RS07455 and MMP_RS07460 are separated by 0 nucleotidesMMP_RS07460 and MMP_RS07465 are separated by 5 nucleotidesMMP_RS07465 and MMP_RS07470 are separated by 8 nucleotidesMMP_RS07470 and MMP_RS07475 are separated by 1 nucleotidesMMP_RS07475 and MMP_RS07480 overlap by 1 nucleotides MMP_RS07450: MMP_RS07450 - energy-converting NiFe hydrogenase A subunit EhaA, at 1,418,070 to 1,418,336 _RS07450 MMP_RS07455: MMP_RS07455 - hypothetical protein, at 1,418,323 to 1,418,814 _RS07455 MMP_RS07460: MMP_RS07460 - DUF2109 domain-containing protein, at 1,418,815 to 1,419,081 _RS07460 MMP_RS07465: MMP_RS07465 - DUF2108 domain-containing protein, at 1,419,087 to 1,419,365 _RS07465 MMP_RS07470: MMP_RS07470 - EhaE family protein, at 1,419,374 to 1,419,628 _RS07470 MMP_RS07475: MMP_RS07475 - EhaF family protein, at 1,419,630 to 1,420,103 _RS07475 MMP_RS07480: MMP_RS07480 - EhaG family protein, at 1,420,103 to 1,420,789 _RS07480 Position (kb) 1419 1420Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1418.089 kb on + strandat 1418.117 kb on + strandat 1418.231 kb on + strandat 1418.239 kb on - strandat 1418.261 kb on + strandat 1418.319 kb on + strandat 1418.327 kb on - strandat 1418.348 kb on - strandat 1418.507 kb on - strandat 1418.868 kb on + strandat 1418.953 kb on - strandat 1419.137 kb on + strandat 1419.172 kb on - strandat 1419.309 kb on - strandat 1419.309 kb on - strandat 1419.364 kb on + strandat 1419.517 kb on + strandat 1419.946 kb on + strandat 1420.228 kb on + strandat 1420.245 kb on - strandat 1420.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,418,089 + -5.2
1,418,117 + -4.5
1,418,231 + -4.0
1,418,239 - -4.9
1,418,261 + -2.8
1,418,319 + -4.9
1,418,327 - -4.2
1,418,348 - -2.5
1,418,507 - -1.8
1,418,868 + -3.1
1,418,953 - -5.3
1,419,137 + -4.0
1,419,172 - -2.3
1,419,309 - -4.3
1,419,309 - -4.7
1,419,364 + -3.8
1,419,517 + -3.6
1,419,946 + -4.5
1,420,228 + -2.1
1,420,245 - -2.5
1,420,246 + -3.0

Or see this region's nucleotide sequence