Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07445 and MMP_RS07450 are separated by 5 nucleotides MMP_RS07450 and MMP_RS07455 overlap by 14 nucleotides MMP_RS07455 and MMP_RS07460 are separated by 0 nucleotides MMP_RS07460 and MMP_RS07465 are separated by 5 nucleotides MMP_RS07465 and MMP_RS07470 are separated by 8 nucleotides MMP_RS07470 and MMP_RS07475 are separated by 1 nucleotides
MMP_RS07445: MMP_RS07445 - helix-turn-helix domain-containing protein, at 1,417,426 to 1,418,064
_RS07445
MMP_RS07450: MMP_RS07450 - energy-converting NiFe hydrogenase A subunit EhaA, at 1,418,070 to 1,418,336
_RS07450
MMP_RS07455: MMP_RS07455 - hypothetical protein, at 1,418,323 to 1,418,814
_RS07455
MMP_RS07460: MMP_RS07460 - DUF2109 domain-containing protein, at 1,418,815 to 1,419,081
_RS07460
MMP_RS07465: MMP_RS07465 - DUF2108 domain-containing protein, at 1,419,087 to 1,419,365
_RS07465
MMP_RS07470: MMP_RS07470 - EhaE family protein, at 1,419,374 to 1,419,628
_RS07470
MMP_RS07475: MMP_RS07475 - EhaF family protein, at 1,419,630 to 1,420,103
_RS07475
Position (kb)
1418
1419 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1417.350 kb on + strand at 1417.354 kb on + strand at 1417.458 kb on - strand at 1417.627 kb on + strand, within MMP_RS07445 at 1417.679 kb on - strand, within MMP_RS07445 at 1417.763 kb on + strand, within MMP_RS07445 at 1417.783 kb on - strand, within MMP_RS07445 at 1417.783 kb on - strand, within MMP_RS07445 at 1417.784 kb on + strand, within MMP_RS07445 at 1417.789 kb on + strand, within MMP_RS07445 at 1417.790 kb on - strand, within MMP_RS07445 at 1417.791 kb on + strand, within MMP_RS07445 at 1417.791 kb on + strand, within MMP_RS07445 at 1417.795 kb on + strand, within MMP_RS07445 at 1417.802 kb on + strand, within MMP_RS07445 at 1417.914 kb on - strand, within MMP_RS07445 at 1417.963 kb on + strand, within MMP_RS07445 at 1417.986 kb on + strand, within MMP_RS07445 at 1418.023 kb on - strand at 1418.024 kb on + strand at 1418.028 kb on - strand at 1418.085 kb on + strand at 1418.089 kb on + strand at 1418.117 kb on + strand at 1418.231 kb on + strand at 1418.239 kb on - strand at 1418.261 kb on + strand at 1418.319 kb on + strand at 1418.327 kb on - strand at 1418.348 kb on - strand at 1418.507 kb on - strand at 1418.868 kb on + strand at 1418.953 kb on - strand at 1419.137 kb on + strand at 1419.172 kb on - strand at 1419.309 kb on - strand at 1419.309 kb on - strand at 1419.364 kb on + strand at 1419.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,417,350 + -0.6 1,417,354 + -1.7 1,417,458 - -1.4 1,417,627 + MMP_RS07445 0.31 -0.6 1,417,679 - MMP_RS07445 0.40 -1.1 1,417,763 + MMP_RS07445 0.53 -2.4 1,417,783 - MMP_RS07445 0.56 -3.0 1,417,783 - MMP_RS07445 0.56 -3.4 1,417,784 + MMP_RS07445 0.56 -4.4 1,417,789 + MMP_RS07445 0.57 -5.1 1,417,790 - MMP_RS07445 0.57 -3.4 1,417,791 + MMP_RS07445 0.57 -4.0 1,417,791 + MMP_RS07445 0.57 -3.6 1,417,795 + MMP_RS07445 0.58 -5.7 1,417,802 + MMP_RS07445 0.59 -3.0 1,417,914 - MMP_RS07445 0.76 -2.6 1,417,963 + MMP_RS07445 0.84 -2.8 1,417,986 + MMP_RS07445 0.88 -4.2 1,418,023 - -3.2 1,418,024 + -3.5 1,418,028 - -3.9 1,418,085 + -2.4 1,418,089 + -5.2 1,418,117 + -4.5 1,418,231 + -4.0 1,418,239 - -4.9 1,418,261 + -2.8 1,418,319 + -4.9 1,418,327 - -4.2 1,418,348 - -2.5 1,418,507 - -1.8 1,418,868 + -3.1 1,418,953 - -5.3 1,419,137 + -4.0 1,419,172 - -2.3 1,419,309 - -4.3 1,419,309 - -4.7 1,419,364 + -3.8 1,419,517 + -3.6
Or see this region's nucleotide sequence