Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07340

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07330 and MMP_RS07335 are separated by 112 nucleotidesMMP_RS07335 and MMP_RS07340 are separated by 23 nucleotidesMMP_RS07340 and MMP_RS07345 are separated by 3 nucleotides MMP_RS07330: MMP_RS07330 - membrane protein, at 1,395,606 to 1,398,164 _RS07330 MMP_RS07335: MMP_RS07335 - tRNA (cytidine(56)-2'-O)-methyltransferase, at 1,398,277 to 1,398,816 _RS07335 MMP_RS07340: MMP_RS07340 - dCTP deaminase, at 1,398,840 to 1,399,460 _RS07340 MMP_RS07345: MMP_RS07345 - glycine synthesis protein GlyXL (from data), at 1,399,464 to 1,400,840 _RS07345 Position (kb) 1398 1399 1400Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1398.020 kb on - strandat 1398.021 kb on + strandat 1398.136 kb on - strandat 1398.163 kb on + strandat 1398.206 kb on + strandat 1398.291 kb on + strandat 1398.333 kb on - strand, within MMP_RS07335at 1398.348 kb on + strand, within MMP_RS07335at 1398.512 kb on - strand, within MMP_RS07335at 1398.513 kb on + strand, within MMP_RS07335at 1398.515 kb on - strand, within MMP_RS07335at 1398.516 kb on + strand, within MMP_RS07335at 1398.523 kb on + strand, within MMP_RS07335at 1398.652 kb on - strand, within MMP_RS07335at 1398.838 kb on + strandat 1398.838 kb on + strandat 1398.847 kb on - strandat 1398.871 kb on + strandat 1399.001 kb on + strandat 1399.525 kb on - strandat 1399.526 kb on + strandat 1399.526 kb on + strandat 1399.532 kb on - strandat 1399.533 kb on + strandat 1399.663 kb on + strand, within MMP_RS07345at 1399.679 kb on + strand, within MMP_RS07345at 1399.861 kb on + strand, within MMP_RS07345at 1399.861 kb on + strand, within MMP_RS07345at 1399.959 kb on + strand, within MMP_RS07345at 1399.965 kb on - strand, within MMP_RS07345at 1399.995 kb on + strand, within MMP_RS07345at 1400.292 kb on + strand, within MMP_RS07345at 1400.337 kb on + strand, within MMP_RS07345at 1400.451 kb on + strand, within MMP_RS07345

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,398,020 - -0.3
1,398,021 + +0.4
1,398,136 - +0.2
1,398,163 + +0.4
1,398,206 + +1.2
1,398,291 + -2.1
1,398,333 - MMP_RS07335 0.10 +0.5
1,398,348 + MMP_RS07335 0.13 +0.4
1,398,512 - MMP_RS07335 0.44 +0.9
1,398,513 + MMP_RS07335 0.44 -0.4
1,398,515 - MMP_RS07335 0.44 +0.2
1,398,516 + MMP_RS07335 0.44 +0.2
1,398,523 + MMP_RS07335 0.46 +0.5
1,398,652 - MMP_RS07335 0.69 -0.8
1,398,838 + -1.7
1,398,838 + -3.0
1,398,847 - -1.2
1,398,871 + -2.4
1,399,001 + -3.5
1,399,525 - -3.4
1,399,526 + -2.7
1,399,526 + -3.6
1,399,532 - -3.8
1,399,533 + -5.0
1,399,663 + MMP_RS07345 0.14 -4.9
1,399,679 + MMP_RS07345 0.16 -4.5
1,399,861 + MMP_RS07345 0.29 -3.4
1,399,861 + MMP_RS07345 0.29 -5.4
1,399,959 + MMP_RS07345 0.36 -5.0
1,399,965 - MMP_RS07345 0.36 -4.4
1,399,995 + MMP_RS07345 0.39 -3.5
1,400,292 + MMP_RS07345 0.60 -5.7
1,400,337 + MMP_RS07345 0.63 -4.8
1,400,451 + MMP_RS07345 0.72 -3.3

Or see this region's nucleotide sequence