Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07320

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07305 and MMP_RS07310 are separated by 14 nucleotidesMMP_RS07310 and MMP_RS07320 are separated by 227 nucleotidesMMP_RS07320 and MMP_RS07325 are separated by 39 nucleotides MMP_RS07305: MMP_RS07305 - 50S ribosomal protein L30, at 1,392,104 to 1,392,568 _RS07305 MMP_RS07310: MMP_RS07310 - 50S ribosomal protein L15, at 1,392,583 to 1,393,014 _RS07310 MMP_RS07320: MMP_RS07320 - preprotein translocase subunit SecY, at 1,393,242 to 1,394,570 _RS07320 MMP_RS07325: MMP_RS07325 - glycosyl transferase, at 1,394,610 to 1,395,509 _RS07325 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1392.436 kb on + strandat 1393.095 kb on - strandat 1393.175 kb on + strandat 1393.271 kb on - strandat 1393.363 kb on + strandat 1393.915 kb on - strandat 1394.152 kb on + strandat 1394.234 kb on + strandat 1394.502 kb on - strandat 1394.582 kb on - strandat 1394.644 kb on + strandat 1394.692 kb on + strandat 1394.702 kb on + strandat 1394.799 kb on - strandat 1394.985 kb on - strandat 1394.986 kb on + strandat 1395.039 kb on + strandat 1395.421 kb on - strandat 1395.490 kb on + strandat 1395.523 kb on + strandat 1395.523 kb on + strandat 1395.523 kb on + strandat 1395.528 kb on + strandat 1395.554 kb on - strandat 1395.555 kb on + strandat 1395.558 kb on - strandat 1395.558 kb on - strandat 1395.559 kb on + strandat 1395.560 kb on - strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.561 kb on + strandat 1395.563 kb on + strandat 1395.564 kb on - strandat 1395.564 kb on - strandat 1395.564 kb on - strandat 1395.565 kb on + strandat 1395.565 kb on + strandat 1395.565 kb on + strandat 1395.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,392,436 + -3.0
1,393,095 - -0.9
1,393,175 + -3.6
1,393,271 - -1.2
1,393,363 + -4.2
1,393,915 - -1.9
1,394,152 + -2.0
1,394,234 + -2.2
1,394,502 - -0.6
1,394,582 - -1.5
1,394,644 + -1.7
1,394,692 + -0.6
1,394,702 + -1.4
1,394,799 - -1.5
1,394,985 - -2.9
1,394,986 + -1.5
1,395,039 + -0.3
1,395,421 - -0.7
1,395,490 + -0.0
1,395,523 + -1.9
1,395,523 + -5.0
1,395,523 + -1.6
1,395,528 + +0.5
1,395,554 - +0.8
1,395,555 + +0.6
1,395,558 - +0.8
1,395,558 - -0.1
1,395,559 + +0.5
1,395,560 - +0.5
1,395,561 + +1.0
1,395,561 + +0.3
1,395,561 + +0.3
1,395,561 + +0.0
1,395,563 + +1.4
1,395,564 - -1.7
1,395,564 - -0.2
1,395,564 - -1.0
1,395,565 + +0.8
1,395,565 + -0.1
1,395,565 + +1.0
1,395,565 + +0.6

Or see this region's nucleotide sequence