Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07235

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS07220 and MMP_RS07225 are separated by 10 nucleotidesMMP_RS07225 and MMP_RS07230 are separated by 10 nucleotidesMMP_RS07230 and MMP_RS07235 are separated by 83 nucleotidesMMP_RS07235 and MMP_RS07240 are separated by 69 nucleotidesMMP_RS07240 and MMP_RS07245 are separated by 165 nucleotidesMMP_RS07245 and MMP_RS07250 are separated by 20 nucleotides MMP_RS07220: MMP_RS07220 - 50S ribosomal protein L22, at 1,384,030 to 1,384,491 _RS07220 MMP_RS07225: MMP_RS07225 - 30S ribosomal protein S3, at 1,384,502 to 1,385,137 _RS07225 MMP_RS07230: MMP_RS07230 - 50S ribosomal protein L29, at 1,385,148 to 1,385,363 _RS07230 MMP_RS07235: MMP_RS07235 - stress response translation initiation inhibitor YciH, at 1,385,447 to 1,385,755 _RS07235 MMP_RS07240: MMP_RS07240 - ribonuclease P protein component 1, at 1,385,825 to 1,386,121 _RS07240 MMP_RS07245: MMP_RS07245 - 30S ribosomal protein S17, at 1,386,287 to 1,386,616 _RS07245 MMP_RS07250: MMP_RS07250 - 50S ribosomal protein L14, at 1,386,637 to 1,387,035 _RS07250 Position (kb) 1385 1386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1385.368 kb on + strandat 1385.406 kb on + strandat 1385.743 kb on + strandat 1385.743 kb on + strandat 1386.111 kb on + strandat 1386.195 kb on - strandat 1386.211 kb on + strandat 1386.287 kb on + strandat 1386.453 kb on - strandat 1386.637 kb on + strandat 1386.750 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,385,368 + -0.2
1,385,406 + -2.8
1,385,743 + -4.5
1,385,743 + -0.4
1,386,111 + -4.1
1,386,195 - -1.0
1,386,211 + -2.0
1,386,287 + -1.6
1,386,453 - -3.0
1,386,637 + -2.6
1,386,750 + -1.2

Or see this region's nucleotide sequence