Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07220

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07200 and MMP_RS07205 are separated by 18 nucleotidesMMP_RS07205 and MMP_RS07210 are separated by 31 nucleotidesMMP_RS07210 and MMP_RS07215 are separated by 142 nucleotidesMMP_RS07215 and MMP_RS07220 are separated by 19 nucleotidesMMP_RS07220 and MMP_RS07225 are separated by 10 nucleotidesMMP_RS07225 and MMP_RS07230 are separated by 10 nucleotidesMMP_RS07230 and MMP_RS07235 are separated by 83 nucleotides MMP_RS07200: MMP_RS07200 - [5-(aminomethyl)furan-3-yl]methyl phosphate kinase, at 1,382,587 to 1,383,225 _RS07200 MMP_RS07205: MMP_RS07205 - zinc finger domain-containing protein, at 1,383,244 to 1,383,408 _RS07205 MMP_RS07210: MMP_RS07210 - elongation factor 1-beta, at 1,383,440 to 1,383,709 _RS07210 MMP_RS07215: MMP_RS07215 - hypothetical protein, at 1,383,852 to 1,384,010 _RS07215 MMP_RS07220: MMP_RS07220 - 50S ribosomal protein L22, at 1,384,030 to 1,384,491 _RS07220 MMP_RS07225: MMP_RS07225 - 30S ribosomal protein S3, at 1,384,502 to 1,385,137 _RS07225 MMP_RS07230: MMP_RS07230 - 50S ribosomal protein L29, at 1,385,148 to 1,385,363 _RS07230 MMP_RS07235: MMP_RS07235 - stress response translation initiation inhibitor YciH, at 1,385,447 to 1,385,755 _RS07235 Position (kb) 1384 1385Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1383.031 kb on - strand, within MMP_RS07200at 1383.050 kb on - strand, within MMP_RS07200at 1383.085 kb on + strand, within MMP_RS07200at 1383.203 kb on + strandat 1383.596 kb on - strandat 1383.597 kb on + strandat 1385.368 kb on + strandat 1385.406 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,383,031 - MMP_RS07200 0.69 -1.6
1,383,050 - MMP_RS07200 0.72 -1.7
1,383,085 + MMP_RS07200 0.78 -2.6
1,383,203 + -1.8
1,383,596 - -3.8
1,383,597 + -4.6
1,385,368 + -0.2
1,385,406 + -2.8

Or see this region's nucleotide sequence