Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07165 and MMP_RS07170 are separated by 138 nucleotides MMP_RS07170 and MMP_RS07175 are separated by 2 nucleotides MMP_RS07175 and MMP_RS07180 are separated by 9 nucleotides
MMP_RS07165: MMP_RS07165 - RNA-splicing ligase RtcB, at 1,370,973 to 1,372,415
_RS07165
MMP_RS07170: MMP_RS07170 - DUF371 domain-containing protein, at 1,372,554 to 1,372,970
_RS07170
MMP_RS07175: MMP_RS07175 - type I 3-dehydroquinate dehydratase, at 1,372,973 to 1,373,629
_RS07175
MMP_RS07180: MMP_RS07180 - DEAD/DEAH box helicase, at 1,373,639 to 1,375,897
_RS07180
Position (kb)
1372
1373
1374 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1372.079 kb on - strand at 1372.450 kb on - strand at 1372.457 kb on - strand at 1372.463 kb on + strand at 1372.463 kb on + strand at 1372.464 kb on - strand at 1372.494 kb on - strand at 1372.516 kb on - strand at 1372.958 kb on + strand at 1373.241 kb on + strand at 1373.327 kb on + strand at 1373.360 kb on - strand at 1373.672 kb on + strand at 1373.765 kb on - strand at 1374.041 kb on - strand, within MMP_RS07180 at 1374.095 kb on + strand, within MMP_RS07180 at 1374.161 kb on + strand, within MMP_RS07180 at 1374.249 kb on + strand, within MMP_RS07180 at 1374.360 kb on - strand, within MMP_RS07180 at 1374.361 kb on + strand, within MMP_RS07180 at 1374.431 kb on - strand, within MMP_RS07180 at 1374.432 kb on + strand, within MMP_RS07180 at 1374.615 kb on + strand, within MMP_RS07180 at 1374.626 kb on - strand, within MMP_RS07180
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,372,079 - -1.5 1,372,450 - -0.2 1,372,457 - -0.0 1,372,463 + -0.0 1,372,463 + -1.7 1,372,464 - -1.2 1,372,494 - -1.7 1,372,516 - +0.8 1,372,958 + +0.0 1,373,241 + -3.0 1,373,327 + -3.6 1,373,360 - -2.8 1,373,672 + -0.8 1,373,765 - +0.7 1,374,041 - MMP_RS07180 0.18 -0.8 1,374,095 + MMP_RS07180 0.20 +0.0 1,374,161 + MMP_RS07180 0.23 -0.4 1,374,249 + MMP_RS07180 0.27 +0.2 1,374,360 - MMP_RS07180 0.32 -0.1 1,374,361 + MMP_RS07180 0.32 +1.3 1,374,431 - MMP_RS07180 0.35 -0.0 1,374,432 + MMP_RS07180 0.35 +0.5 1,374,615 + MMP_RS07180 0.43 -1.5 1,374,626 - MMP_RS07180 0.44 -1.3
Or see this region's nucleotide sequence