Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07175

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07165 and MMP_RS07170 are separated by 138 nucleotidesMMP_RS07170 and MMP_RS07175 are separated by 2 nucleotidesMMP_RS07175 and MMP_RS07180 are separated by 9 nucleotides MMP_RS07165: MMP_RS07165 - RNA-splicing ligase RtcB, at 1,370,973 to 1,372,415 _RS07165 MMP_RS07170: MMP_RS07170 - DUF371 domain-containing protein, at 1,372,554 to 1,372,970 _RS07170 MMP_RS07175: MMP_RS07175 - type I 3-dehydroquinate dehydratase, at 1,372,973 to 1,373,629 _RS07175 MMP_RS07180: MMP_RS07180 - DEAD/DEAH box helicase, at 1,373,639 to 1,375,897 _RS07180 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -3 -2 -1 0 1at 1372.079 kb on - strandat 1372.450 kb on - strandat 1372.457 kb on - strandat 1372.463 kb on + strandat 1372.463 kb on + strandat 1372.464 kb on - strandat 1372.494 kb on - strandat 1372.516 kb on - strandat 1372.958 kb on + strandat 1373.241 kb on + strandat 1373.327 kb on + strandat 1373.360 kb on - strandat 1373.672 kb on + strandat 1373.765 kb on - strandat 1374.041 kb on - strand, within MMP_RS07180at 1374.095 kb on + strand, within MMP_RS07180at 1374.161 kb on + strand, within MMP_RS07180at 1374.249 kb on + strand, within MMP_RS07180at 1374.360 kb on - strand, within MMP_RS07180at 1374.361 kb on + strand, within MMP_RS07180at 1374.431 kb on - strand, within MMP_RS07180at 1374.432 kb on + strand, within MMP_RS07180at 1374.615 kb on + strand, within MMP_RS07180at 1374.626 kb on - strand, within MMP_RS07180

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,372,079 - -1.5
1,372,450 - -0.2
1,372,457 - -0.0
1,372,463 + -0.0
1,372,463 + -1.7
1,372,464 - -1.2
1,372,494 - -1.7
1,372,516 - +0.8
1,372,958 + +0.0
1,373,241 + -3.0
1,373,327 + -3.6
1,373,360 - -2.8
1,373,672 + -0.8
1,373,765 - +0.7
1,374,041 - MMP_RS07180 0.18 -0.8
1,374,095 + MMP_RS07180 0.20 +0.0
1,374,161 + MMP_RS07180 0.23 -0.4
1,374,249 + MMP_RS07180 0.27 +0.2
1,374,360 - MMP_RS07180 0.32 -0.1
1,374,361 + MMP_RS07180 0.32 +1.3
1,374,431 - MMP_RS07180 0.35 -0.0
1,374,432 + MMP_RS07180 0.35 +0.5
1,374,615 + MMP_RS07180 0.43 -1.5
1,374,626 - MMP_RS07180 0.44 -1.3

Or see this region's nucleotide sequence