Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS09025 and MMP_RS07105 are separated by 14 nucleotides MMP_RS07105 and MMP_RS07110 are separated by 73 nucleotides MMP_RS07110 and MMP_RS07115 are separated by 60 nucleotides
MMP_RS09025: MMP_RS09025 - hypothetical protein, at 1,358,903 to 1,359,079
_RS09025
MMP_RS07105: MMP_RS07105 - thymidylate synthase, at 1,359,094 to 1,359,732
_RS07105
MMP_RS07110: MMP_RS07110 - amidohydrolase family protein, at 1,359,806 to 1,360,924
_RS07110
MMP_RS07115: MMP_RS07115 - MBL fold metallo-hydrolase, at 1,360,985 to 1,362,253
_RS07115
Position (kb)
1359
1360
1361 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1358.809 kb on - strand at 1358.867 kb on + strand at 1358.896 kb on + strand at 1359.006 kb on + strand, within MMP_RS09025 at 1359.078 kb on + strand at 1359.086 kb on + strand at 1359.101 kb on + strand at 1359.124 kb on + strand at 1359.813 kb on + strand at 1360.477 kb on + strand at 1360.623 kb on + strand at 1360.625 kb on + strand at 1360.749 kb on - strand at 1360.749 kb on - strand at 1360.805 kb on + strand at 1360.914 kb on - strand at 1360.945 kb on - strand at 1360.966 kb on + strand at 1361.180 kb on - strand, within MMP_RS07115 at 1361.226 kb on - strand, within MMP_RS07115 at 1361.238 kb on - strand, within MMP_RS07115 at 1361.462 kb on + strand, within MMP_RS07115 at 1361.508 kb on - strand, within MMP_RS07115 at 1361.538 kb on - strand, within MMP_RS07115 at 1361.542 kb on - strand, within MMP_RS07115 at 1361.544 kb on - strand, within MMP_RS07115 at 1361.545 kb on + strand, within MMP_RS07115 at 1361.679 kb on + strand, within MMP_RS07115 at 1361.867 kb on + strand, within MMP_RS07115
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,358,809 - -0.4 1,358,867 + -0.2 1,358,896 + -0.4 1,359,006 + MMP_RS09025 0.58 +0.4 1,359,078 + +0.3 1,359,086 + +0.9 1,359,101 + +0.7 1,359,124 + -0.5 1,359,813 + -1.4 1,360,477 + -2.3 1,360,623 + -1.4 1,360,625 + -2.9 1,360,749 - -3.3 1,360,749 - -2.2 1,360,805 + -1.2 1,360,914 - +0.5 1,360,945 - +0.4 1,360,966 + -0.3 1,361,180 - MMP_RS07115 0.15 +0.5 1,361,226 - MMP_RS07115 0.19 -0.2 1,361,238 - MMP_RS07115 0.20 +0.7 1,361,462 + MMP_RS07115 0.38 -0.5 1,361,508 - MMP_RS07115 0.41 -0.6 1,361,538 - MMP_RS07115 0.44 -0.7 1,361,542 - MMP_RS07115 0.44 +0.7 1,361,544 - MMP_RS07115 0.44 -0.4 1,361,545 + MMP_RS07115 0.44 +0.6 1,361,679 + MMP_RS07115 0.55 +0.0 1,361,867 + MMP_RS07115 0.70 +1.2
Or see this region's nucleotide sequence