Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07110

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS09025 and MMP_RS07105 are separated by 14 nucleotidesMMP_RS07105 and MMP_RS07110 are separated by 73 nucleotidesMMP_RS07110 and MMP_RS07115 are separated by 60 nucleotides MMP_RS09025: MMP_RS09025 - hypothetical protein, at 1,358,903 to 1,359,079 _RS09025 MMP_RS07105: MMP_RS07105 - thymidylate synthase, at 1,359,094 to 1,359,732 _RS07105 MMP_RS07110: MMP_RS07110 - amidohydrolase family protein, at 1,359,806 to 1,360,924 _RS07110 MMP_RS07115: MMP_RS07115 - MBL fold metallo-hydrolase, at 1,360,985 to 1,362,253 _RS07115 Position (kb) 1359 1360 1361Strain fitness (log2 ratio) -3 -2 -1 0 1at 1358.809 kb on - strandat 1358.867 kb on + strandat 1358.896 kb on + strandat 1359.006 kb on + strand, within MMP_RS09025at 1359.078 kb on + strandat 1359.086 kb on + strandat 1359.101 kb on + strandat 1359.124 kb on + strandat 1359.813 kb on + strandat 1360.477 kb on + strandat 1360.623 kb on + strandat 1360.625 kb on + strandat 1360.749 kb on - strandat 1360.749 kb on - strandat 1360.805 kb on + strandat 1360.914 kb on - strandat 1360.945 kb on - strandat 1360.966 kb on + strandat 1361.180 kb on - strand, within MMP_RS07115at 1361.226 kb on - strand, within MMP_RS07115at 1361.238 kb on - strand, within MMP_RS07115at 1361.462 kb on + strand, within MMP_RS07115at 1361.508 kb on - strand, within MMP_RS07115at 1361.538 kb on - strand, within MMP_RS07115at 1361.542 kb on - strand, within MMP_RS07115at 1361.544 kb on - strand, within MMP_RS07115at 1361.545 kb on + strand, within MMP_RS07115at 1361.679 kb on + strand, within MMP_RS07115at 1361.867 kb on + strand, within MMP_RS07115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,358,809 - -0.4
1,358,867 + -0.2
1,358,896 + -0.4
1,359,006 + MMP_RS09025 0.58 +0.4
1,359,078 + +0.3
1,359,086 + +0.9
1,359,101 + +0.7
1,359,124 + -0.5
1,359,813 + -1.4
1,360,477 + -2.3
1,360,623 + -1.4
1,360,625 + -2.9
1,360,749 - -3.3
1,360,749 - -2.2
1,360,805 + -1.2
1,360,914 - +0.5
1,360,945 - +0.4
1,360,966 + -0.3
1,361,180 - MMP_RS07115 0.15 +0.5
1,361,226 - MMP_RS07115 0.19 -0.2
1,361,238 - MMP_RS07115 0.20 +0.7
1,361,462 + MMP_RS07115 0.38 -0.5
1,361,508 - MMP_RS07115 0.41 -0.6
1,361,538 - MMP_RS07115 0.44 -0.7
1,361,542 - MMP_RS07115 0.44 +0.7
1,361,544 - MMP_RS07115 0.44 -0.4
1,361,545 + MMP_RS07115 0.44 +0.6
1,361,679 + MMP_RS07115 0.55 +0.0
1,361,867 + MMP_RS07115 0.70 +1.2

Or see this region's nucleotide sequence