Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07050

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07040 and MMP_RS07045 are separated by 16 nucleotidesMMP_RS07045 and MMP_RS07050 are separated by 9 nucleotidesMMP_RS07050 and MMP_RS07055 are separated by 33 nucleotidesMMP_RS07055 and MMP_RS07060 are separated by 101 nucleotides MMP_RS07040: MMP_RS07040 - 50S ribosomal protein L30e, at 1,346,855 to 1,347,175 _RS07040 MMP_RS07045: MMP_RS07045 - NusA-like transcription termination signal-binding factor, at 1,347,192 to 1,347,713 _RS07045 MMP_RS07050: MMP_RS07050 - 30S ribosomal protein S12, at 1,347,723 to 1,348,166 _RS07050 MMP_RS07055: MMP_RS07055 - 30S ribosomal protein S7, at 1,348,200 to 1,348,766 _RS07055 MMP_RS07060: MMP_RS07060 - elongation factor EF-2, at 1,348,868 to 1,351,051 _RS07060 Position (kb) 1347 1348 1349Strain fitness (log2 ratio) -2 -1 0 1at 1346.739 kb on - strandat 1346.740 kb on + strandat 1346.880 kb on - strandat 1346.899 kb on + strandat 1348.302 kb on + strandat 1348.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,346,739 - +0.3
1,346,740 + +0.7
1,346,880 - -2.3
1,346,899 + -0.8
1,348,302 + -2.3
1,348,792 - -2.3

Or see this region's nucleotide sequence