Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07035

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07030 and MMP_RS07035 are separated by 44 nucleotidesMMP_RS07035 and MMP_RS07040 are separated by 197 nucleotidesMMP_RS07040 and MMP_RS07045 are separated by 16 nucleotides MMP_RS07030: MMP_RS07030 - DNA-directed RNA polymerase subunit A', at 1,342,783 to 1,345,452 _RS07030 MMP_RS07035: MMP_RS07035 - DNA-directed RNA polymerase subunit A'', at 1,345,497 to 1,346,657 _RS07035 MMP_RS07040: MMP_RS07040 - 50S ribosomal protein L30e, at 1,346,855 to 1,347,175 _RS07040 MMP_RS07045: MMP_RS07045 - NusA-like transcription termination signal-binding factor, at 1,347,192 to 1,347,713 _RS07045 Position (kb) 1345 1346 1347Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1344.563 kb on + strandat 1344.639 kb on + strandat 1344.639 kb on + strandat 1344.684 kb on + strandat 1344.829 kb on + strandat 1344.958 kb on - strandat 1344.963 kb on + strandat 1345.307 kb on + strandat 1345.479 kb on - strandat 1346.209 kb on + strandat 1346.617 kb on - strandat 1346.617 kb on - strandat 1346.617 kb on - strandat 1346.618 kb on + strandat 1346.618 kb on + strandat 1346.698 kb on - strandat 1346.708 kb on + strandat 1346.739 kb on - strandat 1346.740 kb on + strandat 1346.880 kb on - strandat 1346.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,344,563 + -4.0
1,344,639 + -1.3
1,344,639 + -1.4
1,344,684 + -2.0
1,344,829 + -2.0
1,344,958 - -1.2
1,344,963 + -1.6
1,345,307 + -3.8
1,345,479 - -2.0
1,346,209 + -3.2
1,346,617 - -4.0
1,346,617 - -4.1
1,346,617 - -4.7
1,346,618 + -2.3
1,346,618 + -4.1
1,346,698 - +0.7
1,346,708 + +0.4
1,346,739 - +0.3
1,346,740 + +0.7
1,346,880 - -2.3
1,346,899 + -0.8

Or see this region's nucleotide sequence