Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07030

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07025 and MMP_RS07030 are separated by 51 nucleotidesMMP_RS07030 and MMP_RS07035 are separated by 44 nucleotides MMP_RS07025: MMP_RS07025 - DNA-directed RNA polymerase subunit B, at 1,340,896 to 1,342,731 _RS07025 MMP_RS07030: MMP_RS07030 - DNA-directed RNA polymerase subunit A', at 1,342,783 to 1,345,452 _RS07030 MMP_RS07035: MMP_RS07035 - DNA-directed RNA polymerase subunit A'', at 1,345,497 to 1,346,657 _RS07035 Position (kb) 1342 1343 1344 1345 1346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1343.061 kb on - strandat 1343.609 kb on - strandat 1344.563 kb on + strandat 1344.639 kb on + strandat 1344.639 kb on + strandat 1344.684 kb on + strandat 1344.829 kb on + strandat 1344.958 kb on - strandat 1344.963 kb on + strandat 1345.307 kb on + strandat 1345.479 kb on - strandat 1346.209 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,343,061 - +1.0
1,343,609 - -1.5
1,344,563 + -4.0
1,344,639 + -1.3
1,344,639 + -1.4
1,344,684 + -2.0
1,344,829 + -2.0
1,344,958 - -1.2
1,344,963 + -1.6
1,345,307 + -3.8
1,345,479 - -2.0
1,346,209 + -3.2

Or see this region's nucleotide sequence