Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07025

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS07020 and MMP_RS07025 are separated by 43 nucleotidesMMP_RS07025 and MMP_RS07030 are separated by 51 nucleotides MMP_RS07020: MMP_RS07020 - DNA-directed RNA polymerase subunit B'', at 1,339,353 to 1,340,852 _RS07020 MMP_RS07025: MMP_RS07025 - DNA-directed RNA polymerase subunit B, at 1,340,896 to 1,342,731 _RS07025 MMP_RS07030: MMP_RS07030 - DNA-directed RNA polymerase subunit A', at 1,342,783 to 1,345,452 _RS07030 Position (kb) 1340 1341 1342 1343Strain fitness (log2 ratio) -2 -1 0 1at 1339.943 kb on + strandat 1340.021 kb on + strandat 1340.915 kb on - strandat 1341.235 kb on - strandat 1343.061 kb on - strandat 1343.609 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,339,943 + -2.4
1,340,021 + +0.6
1,340,915 - -1.6
1,341,235 - -2.2
1,343,061 - +1.0
1,343,609 - -1.5

Or see this region's nucleotide sequence