Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07015

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07010 and MMP_RS07015 are separated by 253 nucleotidesMMP_RS07015 and MMP_RS07020 are separated by 81 nucleotides MMP_RS07010: MMP_RS07010 - homocysteine biosynthesis protein, at 1,337,240 to 1,338,781 _RS07010 MMP_RS07015: MMP_RS07015 - DNA-directed RNA polymerase subunit H, at 1,339,035 to 1,339,271 _RS07015 MMP_RS07020: MMP_RS07020 - DNA-directed RNA polymerase subunit B'', at 1,339,353 to 1,340,852 _RS07020 Position (kb) 1339 1340Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1338.159 kb on - strandat 1338.159 kb on - strandat 1338.201 kb on + strandat 1338.259 kb on + strandat 1338.259 kb on + strandat 1338.259 kb on + strandat 1338.300 kb on - strandat 1338.398 kb on + strandat 1338.402 kb on - strandat 1338.804 kb on + strandat 1338.822 kb on + strandat 1338.827 kb on + strandat 1338.857 kb on - strandat 1338.858 kb on + strandat 1338.859 kb on - strandat 1338.862 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.865 kb on + strandat 1338.866 kb on - strandat 1338.867 kb on + strandat 1338.867 kb on + strandat 1338.873 kb on - strandat 1338.878 kb on - strandat 1338.879 kb on + strandat 1338.880 kb on - strandat 1338.880 kb on - strandat 1338.882 kb on - strandat 1338.883 kb on + strandat 1338.883 kb on + strandat 1338.889 kb on + strandat 1338.926 kb on + strandat 1338.942 kb on - strandat 1338.945 kb on - strandat 1338.948 kb on + strandat 1339.284 kb on + strandat 1339.317 kb on - strandat 1339.943 kb on + strandat 1340.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,338,159 - -2.3
1,338,159 - -2.7
1,338,201 + -3.0
1,338,259 + -1.0
1,338,259 + -4.4
1,338,259 + -1.1
1,338,300 - -1.2
1,338,398 + -4.0
1,338,402 - -2.8
1,338,804 + -3.6
1,338,822 + -2.6
1,338,827 + -3.5
1,338,857 - +0.3
1,338,858 + -1.7
1,338,859 - -1.0
1,338,862 - +0.3
1,338,864 - -0.5
1,338,864 - -0.7
1,338,864 - -1.2
1,338,864 - +1.8
1,338,865 + -3.7
1,338,866 - -2.3
1,338,867 + -2.8
1,338,867 + -1.9
1,338,873 - +0.6
1,338,878 - +0.0
1,338,879 + -1.4
1,338,880 - +0.5
1,338,880 - +0.1
1,338,882 - +0.2
1,338,883 + +0.1
1,338,883 + +0.6
1,338,889 + +0.4
1,338,926 + +1.9
1,338,942 - -1.9
1,338,945 - +0.7
1,338,948 + -0.7
1,339,284 + -1.5
1,339,317 - -1.5
1,339,943 + -2.4
1,340,021 + +0.6

Or see this region's nucleotide sequence