Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07010

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06995 and MMP_RS07000 are separated by 15 nucleotidesMMP_RS07000 and MMP_RS07005 are separated by 44 nucleotidesMMP_RS07005 and MMP_RS07010 are separated by 13 nucleotidesMMP_RS07010 and MMP_RS07015 are separated by 253 nucleotidesMMP_RS07015 and MMP_RS07020 are separated by 81 nucleotides MMP_RS06995: MMP_RS06995 - TIGR00269 family protein, at 1,335,578 to 1,336,513 _RS06995 MMP_RS07000: MMP_RS07000 - MoaD/ThiS family protein, at 1,336,529 to 1,336,783 _RS07000 MMP_RS07005: MMP_RS07005 - 4Fe-4S binding protein, at 1,336,828 to 1,337,226 _RS07005 MMP_RS07010: MMP_RS07010 - homocysteine biosynthesis protein, at 1,337,240 to 1,338,781 _RS07010 MMP_RS07015: MMP_RS07015 - DNA-directed RNA polymerase subunit H, at 1,339,035 to 1,339,271 _RS07015 MMP_RS07020: MMP_RS07020 - DNA-directed RNA polymerase subunit B'', at 1,339,353 to 1,340,852 _RS07020 Position (kb) 1337 1338 1339Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1336.447 kb on - strandat 1336.448 kb on + strandat 1336.480 kb on + strandat 1336.481 kb on - strandat 1336.517 kb on + strandat 1336.551 kb on - strandat 1336.553 kb on - strandat 1336.553 kb on - strandat 1336.580 kb on - strandat 1336.581 kb on + strandat 1336.622 kb on - strandat 1336.685 kb on - strandat 1336.827 kb on + strandat 1337.128 kb on - strand, within MMP_RS07005at 1337.405 kb on - strandat 1337.406 kb on + strandat 1337.407 kb on - strandat 1337.407 kb on - strandat 1337.407 kb on - strandat 1337.408 kb on + strandat 1337.409 kb on - strandat 1337.409 kb on - strandat 1337.410 kb on + strandat 1337.410 kb on + strandat 1337.414 kb on + strandat 1337.683 kb on - strandat 1337.835 kb on - strandat 1337.836 kb on + strandat 1338.159 kb on - strandat 1338.159 kb on - strandat 1338.201 kb on + strandat 1338.259 kb on + strandat 1338.259 kb on + strandat 1338.259 kb on + strandat 1338.300 kb on - strandat 1338.398 kb on + strandat 1338.402 kb on - strandat 1338.804 kb on + strandat 1338.822 kb on + strandat 1338.827 kb on + strandat 1338.857 kb on - strandat 1338.858 kb on + strandat 1338.859 kb on - strandat 1338.862 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.864 kb on - strandat 1338.865 kb on + strandat 1338.866 kb on - strandat 1338.867 kb on + strandat 1338.867 kb on + strandat 1338.873 kb on - strandat 1338.878 kb on - strandat 1338.879 kb on + strandat 1338.880 kb on - strandat 1338.880 kb on - strandat 1338.882 kb on - strandat 1338.883 kb on + strandat 1338.883 kb on + strandat 1338.889 kb on + strandat 1338.926 kb on + strandat 1338.942 kb on - strandat 1338.945 kb on - strandat 1338.948 kb on + strandat 1339.284 kb on + strandat 1339.317 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,336,447 - -0.2
1,336,448 + -3.2
1,336,480 + -1.0
1,336,481 - -2.9
1,336,517 + -1.4
1,336,551 - -2.2
1,336,553 - -0.7
1,336,553 - +0.3
1,336,580 - -0.0
1,336,581 + -1.3
1,336,622 - +1.0
1,336,685 - -2.5
1,336,827 + -1.6
1,337,128 - MMP_RS07005 0.75 -1.5
1,337,405 - -2.9
1,337,406 + -0.7
1,337,407 - -1.5
1,337,407 - -4.5
1,337,407 - -3.8
1,337,408 + -2.0
1,337,409 - -1.0
1,337,409 - -3.3
1,337,410 + -3.2
1,337,410 + -3.2
1,337,414 + -3.5
1,337,683 - -5.0
1,337,835 - -3.0
1,337,836 + -2.4
1,338,159 - -2.3
1,338,159 - -2.7
1,338,201 + -3.0
1,338,259 + -1.0
1,338,259 + -4.4
1,338,259 + -1.1
1,338,300 - -1.2
1,338,398 + -4.0
1,338,402 - -2.8
1,338,804 + -3.6
1,338,822 + -2.6
1,338,827 + -3.5
1,338,857 - +0.3
1,338,858 + -1.7
1,338,859 - -1.0
1,338,862 - +0.3
1,338,864 - -0.5
1,338,864 - -0.7
1,338,864 - -1.2
1,338,864 - +1.8
1,338,865 + -3.7
1,338,866 - -2.3
1,338,867 + -2.8
1,338,867 + -1.9
1,338,873 - +0.6
1,338,878 - +0.0
1,338,879 + -1.4
1,338,880 - +0.5
1,338,880 - +0.1
1,338,882 - +0.2
1,338,883 + +0.1
1,338,883 + +0.6
1,338,889 + +0.4
1,338,926 + +1.9
1,338,942 - -1.9
1,338,945 - +0.7
1,338,948 + -0.7
1,339,284 + -1.5
1,339,317 - -1.5

Or see this region's nucleotide sequence