Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06960

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS08915 and MMP_RS06960 are separated by 27 nucleotidesMMP_RS06960 and MMP_RS06965 are separated by 16 nucleotides MMP_RS08915: MMP_RS08915 - 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase, at 1,327,842 to 1,328,924 _RS08915 MMP_RS06960: MMP_RS06960 - NAD+ synthase, at 1,328,952 to 1,329,728 _RS06960 MMP_RS06965: MMP_RS06965 - TIGR04014 family B12-binding domain/radical SAM domain-containing protein, at 1,329,745 to 1,331,058 _RS06965 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1327.961 kb on + strand, within MMP_RS08915at 1328.272 kb on + strand, within MMP_RS08915at 1328.499 kb on + strand, within MMP_RS08915at 1328.524 kb on + strand, within MMP_RS08915at 1328.627 kb on - strand, within MMP_RS08915at 1328.664 kb on - strand, within MMP_RS08915at 1328.677 kb on - strand, within MMP_RS08915at 1329.051 kb on + strandat 1329.290 kb on + strandat 1329.347 kb on + strandat 1329.349 kb on - strandat 1329.352 kb on + strandat 1329.546 kb on - strandat 1329.735 kb on + strandat 1329.768 kb on - strandat 1329.768 kb on - strandat 1329.768 kb on - strandat 1329.796 kb on + strandat 1329.849 kb on - strandat 1329.923 kb on + strand, within MMP_RS06965at 1329.930 kb on + strand, within MMP_RS06965at 1330.037 kb on + strand, within MMP_RS06965at 1330.068 kb on - strand, within MMP_RS06965at 1330.283 kb on + strand, within MMP_RS06965at 1330.346 kb on + strand, within MMP_RS06965at 1330.348 kb on + strand, within MMP_RS06965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,327,961 + MMP_RS08915 0.11 -3.3
1,328,272 + MMP_RS08915 0.40 -2.7
1,328,499 + MMP_RS08915 0.61 -2.3
1,328,524 + MMP_RS08915 0.63 +0.6
1,328,627 - MMP_RS08915 0.72 -0.9
1,328,664 - MMP_RS08915 0.76 +0.3
1,328,677 - MMP_RS08915 0.77 +0.4
1,329,051 + -1.5
1,329,290 + -2.4
1,329,347 + -2.8
1,329,349 - -3.9
1,329,352 + -2.7
1,329,546 - -4.2
1,329,735 + -4.0
1,329,768 - -0.3
1,329,768 - -0.7
1,329,768 - -1.8
1,329,796 + +0.4
1,329,849 - +0.4
1,329,923 + MMP_RS06965 0.14 +0.3
1,329,930 + MMP_RS06965 0.14 -0.1
1,330,037 + MMP_RS06965 0.22 -0.4
1,330,068 - MMP_RS06965 0.25 +1.0
1,330,283 + MMP_RS06965 0.41 +0.7
1,330,346 + MMP_RS06965 0.46 -0.0
1,330,348 + MMP_RS06965 0.46 +0.1

Or see this region's nucleotide sequence