Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06875 and MMP_RS06880 are separated by 83 nucleotides MMP_RS06880 and MMP_RS06885 are separated by 382 nucleotides
MMP_RS06875: MMP_RS06875 - FAD-dependent oxidoreductase, at 1,311,840 to 1,312,994
_RS06875
MMP_RS06880: MMP_RS06880 - chorismate synthase, at 1,313,078 to 1,314,199
_RS06880
MMP_RS06885: MMP_RS06885 - 50S ribosome-binding GTPase, at 1,314,582 to 1,315,736
_RS06885
Position (kb)
1313
1314
1315 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1312.100 kb on - strand, within MMP_RS06875 at 1312.119 kb on + strand, within MMP_RS06875 at 1312.161 kb on + strand, within MMP_RS06875 at 1312.172 kb on - strand, within MMP_RS06875 at 1312.326 kb on + strand, within MMP_RS06875 at 1312.462 kb on - strand, within MMP_RS06875 at 1312.783 kb on + strand, within MMP_RS06875 at 1312.792 kb on + strand, within MMP_RS06875 at 1312.792 kb on + strand, within MMP_RS06875 at 1312.822 kb on + strand, within MMP_RS06875 at 1312.833 kb on - strand, within MMP_RS06875 at 1312.834 kb on + strand, within MMP_RS06875 at 1312.861 kb on + strand, within MMP_RS06875 at 1312.864 kb on - strand, within MMP_RS06875 at 1312.865 kb on + strand, within MMP_RS06875 at 1313.029 kb on + strand at 1313.058 kb on - strand at 1314.178 kb on - strand at 1314.197 kb on - strand at 1314.198 kb on + strand at 1314.286 kb on - strand at 1314.287 kb on + strand at 1314.313 kb on + strand at 1314.321 kb on - strand at 1314.321 kb on - strand at 1314.321 kb on - strand at 1314.373 kb on + strand at 1314.448 kb on + strand at 1314.504 kb on + strand at 1314.504 kb on + strand at 1314.553 kb on + strand at 1314.559 kb on - strand at 1314.560 kb on + strand at 1314.564 kb on - strand at 1314.566 kb on - strand at 1314.566 kb on - strand at 1314.567 kb on + strand at 1314.567 kb on + strand at 1314.569 kb on + strand at 1314.569 kb on + strand at 1314.569 kb on + strand at 1314.569 kb on + strand at 1314.590 kb on - strand at 1314.741 kb on - strand, within MMP_RS06885 at 1314.771 kb on - strand, within MMP_RS06885 at 1314.926 kb on + strand, within MMP_RS06885
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,312,100 - MMP_RS06875 0.23 -0.6 1,312,119 + MMP_RS06875 0.24 +0.6 1,312,161 + MMP_RS06875 0.28 +0.3 1,312,172 - MMP_RS06875 0.29 +0.1 1,312,326 + MMP_RS06875 0.42 +0.3 1,312,462 - MMP_RS06875 0.54 +0.0 1,312,783 + MMP_RS06875 0.82 +1.1 1,312,792 + MMP_RS06875 0.82 -0.0 1,312,792 + MMP_RS06875 0.82 -1.4 1,312,822 + MMP_RS06875 0.85 +0.4 1,312,833 - MMP_RS06875 0.86 -0.2 1,312,834 + MMP_RS06875 0.86 -0.9 1,312,861 + MMP_RS06875 0.88 +0.2 1,312,864 - MMP_RS06875 0.89 -0.9 1,312,865 + MMP_RS06875 0.89 +1.3 1,313,029 + -1.5 1,313,058 - -1.0 1,314,178 - -4.3 1,314,197 - -0.1 1,314,198 + -0.3 1,314,286 - -0.9 1,314,287 + +1.0 1,314,313 + -0.7 1,314,321 - +0.7 1,314,321 - -1.2 1,314,321 - -1.0 1,314,373 + +0.4 1,314,448 + +0.5 1,314,504 + +0.5 1,314,504 + -0.1 1,314,553 + +0.6 1,314,559 - +0.1 1,314,560 + +0.1 1,314,564 - +1.0 1,314,566 - +0.2 1,314,566 - +1.3 1,314,567 + +0.5 1,314,567 + +0.5 1,314,569 + +0.4 1,314,569 + +1.0 1,314,569 + +0.6 1,314,569 + -0.4 1,314,590 - -0.4 1,314,741 - MMP_RS06885 0.14 -0.8 1,314,771 - MMP_RS06885 0.16 -1.4 1,314,926 + MMP_RS06885 0.30 -0.9
Or see this region's nucleotide sequence