Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06880

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06875 and MMP_RS06880 are separated by 83 nucleotidesMMP_RS06880 and MMP_RS06885 are separated by 382 nucleotides MMP_RS06875: MMP_RS06875 - FAD-dependent oxidoreductase, at 1,311,840 to 1,312,994 _RS06875 MMP_RS06880: MMP_RS06880 - chorismate synthase, at 1,313,078 to 1,314,199 _RS06880 MMP_RS06885: MMP_RS06885 - 50S ribosome-binding GTPase, at 1,314,582 to 1,315,736 _RS06885 Position (kb) 1313 1314 1315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1312.100 kb on - strand, within MMP_RS06875at 1312.119 kb on + strand, within MMP_RS06875at 1312.161 kb on + strand, within MMP_RS06875at 1312.172 kb on - strand, within MMP_RS06875at 1312.326 kb on + strand, within MMP_RS06875at 1312.462 kb on - strand, within MMP_RS06875at 1312.783 kb on + strand, within MMP_RS06875at 1312.792 kb on + strand, within MMP_RS06875at 1312.792 kb on + strand, within MMP_RS06875at 1312.822 kb on + strand, within MMP_RS06875at 1312.833 kb on - strand, within MMP_RS06875at 1312.834 kb on + strand, within MMP_RS06875at 1312.861 kb on + strand, within MMP_RS06875at 1312.864 kb on - strand, within MMP_RS06875at 1312.865 kb on + strand, within MMP_RS06875at 1313.029 kb on + strandat 1313.058 kb on - strandat 1314.178 kb on - strandat 1314.197 kb on - strandat 1314.198 kb on + strandat 1314.286 kb on - strandat 1314.287 kb on + strandat 1314.313 kb on + strandat 1314.321 kb on - strandat 1314.321 kb on - strandat 1314.321 kb on - strandat 1314.373 kb on + strandat 1314.448 kb on + strandat 1314.504 kb on + strandat 1314.504 kb on + strandat 1314.553 kb on + strandat 1314.559 kb on - strandat 1314.560 kb on + strandat 1314.564 kb on - strandat 1314.566 kb on - strandat 1314.566 kb on - strandat 1314.567 kb on + strandat 1314.567 kb on + strandat 1314.569 kb on + strandat 1314.569 kb on + strandat 1314.569 kb on + strandat 1314.569 kb on + strandat 1314.590 kb on - strandat 1314.741 kb on - strand, within MMP_RS06885at 1314.771 kb on - strand, within MMP_RS06885at 1314.926 kb on + strand, within MMP_RS06885

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,312,100 - MMP_RS06875 0.23 -0.6
1,312,119 + MMP_RS06875 0.24 +0.6
1,312,161 + MMP_RS06875 0.28 +0.3
1,312,172 - MMP_RS06875 0.29 +0.1
1,312,326 + MMP_RS06875 0.42 +0.3
1,312,462 - MMP_RS06875 0.54 +0.0
1,312,783 + MMP_RS06875 0.82 +1.1
1,312,792 + MMP_RS06875 0.82 -0.0
1,312,792 + MMP_RS06875 0.82 -1.4
1,312,822 + MMP_RS06875 0.85 +0.4
1,312,833 - MMP_RS06875 0.86 -0.2
1,312,834 + MMP_RS06875 0.86 -0.9
1,312,861 + MMP_RS06875 0.88 +0.2
1,312,864 - MMP_RS06875 0.89 -0.9
1,312,865 + MMP_RS06875 0.89 +1.3
1,313,029 + -1.5
1,313,058 - -1.0
1,314,178 - -4.3
1,314,197 - -0.1
1,314,198 + -0.3
1,314,286 - -0.9
1,314,287 + +1.0
1,314,313 + -0.7
1,314,321 - +0.7
1,314,321 - -1.2
1,314,321 - -1.0
1,314,373 + +0.4
1,314,448 + +0.5
1,314,504 + +0.5
1,314,504 + -0.1
1,314,553 + +0.6
1,314,559 - +0.1
1,314,560 + +0.1
1,314,564 - +1.0
1,314,566 - +0.2
1,314,566 - +1.3
1,314,567 + +0.5
1,314,567 + +0.5
1,314,569 + +0.4
1,314,569 + +1.0
1,314,569 + +0.6
1,314,569 + -0.4
1,314,590 - -0.4
1,314,741 - MMP_RS06885 0.14 -0.8
1,314,771 - MMP_RS06885 0.16 -1.4
1,314,926 + MMP_RS06885 0.30 -0.9

Or see this region's nucleotide sequence