Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06805

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06790 and MMP_RS06795 are separated by 203 nucleotidesMMP_RS06795 and MMP_RS06800 are separated by 401 nucleotidesMMP_RS06800 and MMP_RS06805 are separated by 58 nucleotidesMMP_RS06805 and MMP_RS06810 are separated by 23 nucleotidesMMP_RS06810 and MMP_RS06815 are separated by 9 nucleotides MMP_RS06790: MMP_RS06790 - lysine--tRNA ligase, at 1,303,479 to 1,305,080 _RS06790 MMP_RS06795: MMP_RS06795 - tRNA-Cys, at 1,305,284 to 1,305,357 _RS06795 MMP_RS06800: MMP_RS06800 - tRNA-Ser, at 1,305,759 to 1,305,846 _RS06800 MMP_RS06805: MMP_RS06805 - 30S ribosomal protein S13, at 1,305,905 to 1,306,354 _RS06805 MMP_RS06810: MMP_RS06810 - 30S ribosomal protein S4, at 1,306,378 to 1,306,914 _RS06810 MMP_RS06815: MMP_RS06815 - 30S ribosomal protein S11, at 1,306,924 to 1,307,298 _RS06815 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1at 1305.195 kb on - strandat 1305.196 kb on + strandat 1305.211 kb on - strandat 1305.463 kb on - strandat 1305.488 kb on - strandat 1305.493 kb on - strandat 1305.495 kb on - strandat 1305.495 kb on - strandat 1305.496 kb on + strandat 1305.515 kb on - strandat 1305.515 kb on - strandat 1305.516 kb on + strandat 1305.516 kb on + strandat 1305.516 kb on + strandat 1305.517 kb on - strandat 1305.544 kb on - strandat 1305.562 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,305,195 - +0.1
1,305,196 + -1.5
1,305,211 - -0.2
1,305,463 - +0.2
1,305,488 - +0.7
1,305,493 - +0.3
1,305,495 - -0.7
1,305,495 - +0.3
1,305,496 + -0.3
1,305,515 - +0.7
1,305,515 - -1.1
1,305,516 + -2.7
1,305,516 + -0.8
1,305,516 + +0.5
1,305,517 - +1.5
1,305,544 - -0.9
1,305,562 + +0.2

Or see this region's nucleotide sequence