Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06790

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06785 and MMP_RS06790 are separated by 145 nucleotidesMMP_RS06790 and MMP_RS06795 are separated by 203 nucleotidesMMP_RS06795 and MMP_RS06800 are separated by 401 nucleotidesMMP_RS06800 and MMP_RS06805 are separated by 58 nucleotides MMP_RS06785: MMP_RS06785 - hypothetical protein, at 1,302,557 to 1,303,333 _RS06785 MMP_RS06790: MMP_RS06790 - lysine--tRNA ligase, at 1,303,479 to 1,305,080 _RS06790 MMP_RS06795: MMP_RS06795 - tRNA-Cys, at 1,305,284 to 1,305,357 _RS06795 MMP_RS06800: MMP_RS06800 - tRNA-Ser, at 1,305,759 to 1,305,846 _RS06800 MMP_RS06805: MMP_RS06805 - 30S ribosomal protein S13, at 1,305,905 to 1,306,354 _RS06805 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1at 1303.135 kb on - strandat 1303.321 kb on - strandat 1303.363 kb on - strandat 1303.366 kb on + strandat 1303.369 kb on + strandat 1303.376 kb on - strandat 1303.406 kb on - strandat 1303.440 kb on - strandat 1303.441 kb on + strandat 1303.444 kb on - strandat 1303.480 kb on - strandat 1303.639 kb on + strandat 1304.223 kb on - strandat 1304.666 kb on - strandat 1305.195 kb on - strandat 1305.196 kb on + strandat 1305.211 kb on - strandat 1305.463 kb on - strandat 1305.488 kb on - strandat 1305.493 kb on - strandat 1305.495 kb on - strandat 1305.495 kb on - strandat 1305.496 kb on + strandat 1305.515 kb on - strandat 1305.515 kb on - strandat 1305.516 kb on + strandat 1305.516 kb on + strandat 1305.516 kb on + strandat 1305.517 kb on - strandat 1305.544 kb on - strandat 1305.562 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,303,135 - -1.5
1,303,321 - -3.0
1,303,363 - -1.4
1,303,366 + +1.0
1,303,369 + -2.8
1,303,376 - +0.1
1,303,406 - +0.2
1,303,440 - -0.5
1,303,441 + -1.7
1,303,444 - +0.1
1,303,480 - +1.0
1,303,639 + -0.7
1,304,223 - -2.0
1,304,666 - -2.4
1,305,195 - +0.1
1,305,196 + -1.5
1,305,211 - -0.2
1,305,463 - +0.2
1,305,488 - +0.7
1,305,493 - +0.3
1,305,495 - -0.7
1,305,495 - +0.3
1,305,496 + -0.3
1,305,515 - +0.7
1,305,515 - -1.1
1,305,516 + -2.7
1,305,516 + -0.8
1,305,516 + +0.5
1,305,517 - +1.5
1,305,544 - -0.9
1,305,562 + +0.2

Or see this region's nucleotide sequence