Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06785

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS06775 and MMP_RS06780 are separated by 9 nucleotidesMMP_RS06780 and MMP_RS06785 are separated by 99 nucleotidesMMP_RS06785 and MMP_RS06790 are separated by 145 nucleotides MMP_RS06775: MMP_RS06775 - 2-oxoacid:ferredoxin oxidoreductase subunit gamma, at 1,301,117 to 1,301,650 _RS06775 MMP_RS06780: MMP_RS06780 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 1,301,660 to 1,302,457 _RS06780 MMP_RS06785: MMP_RS06785 - hypothetical protein, at 1,302,557 to 1,303,333 _RS06785 MMP_RS06790: MMP_RS06790 - lysine--tRNA ligase, at 1,303,479 to 1,305,080 _RS06790 Position (kb) 1302 1303 1304Strain fitness (log2 ratio) -3 -2 -1 0 1at 1301.588 kb on - strandat 1303.135 kb on - strandat 1303.321 kb on - strandat 1303.363 kb on - strandat 1303.366 kb on + strandat 1303.369 kb on + strandat 1303.376 kb on - strandat 1303.406 kb on - strandat 1303.440 kb on - strandat 1303.441 kb on + strandat 1303.444 kb on - strandat 1303.480 kb on - strandat 1303.639 kb on + strandat 1304.223 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,301,588 - -0.6
1,303,135 - -1.5
1,303,321 - -3.0
1,303,363 - -1.4
1,303,366 + +1.0
1,303,369 + -2.8
1,303,376 - +0.1
1,303,406 - +0.2
1,303,440 - -0.5
1,303,441 + -1.7
1,303,444 - +0.1
1,303,480 - +1.0
1,303,639 + -0.7
1,304,223 - -2.0

Or see this region's nucleotide sequence