Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06780

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06770 and MMP_RS06775 are separated by 320 nucleotidesMMP_RS06775 and MMP_RS06780 are separated by 9 nucleotidesMMP_RS06780 and MMP_RS06785 are separated by 99 nucleotides MMP_RS06770: MMP_RS06770 - DHH family phosphoesterase, at 1,298,511 to 1,300,796 _RS06770 MMP_RS06775: MMP_RS06775 - 2-oxoacid:ferredoxin oxidoreductase subunit gamma, at 1,301,117 to 1,301,650 _RS06775 MMP_RS06780: MMP_RS06780 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 1,301,660 to 1,302,457 _RS06780 MMP_RS06785: MMP_RS06785 - hypothetical protein, at 1,302,557 to 1,303,333 _RS06785 Position (kb) 1301 1302 1303Strain fitness (log2 ratio) -3 -2 -1 0 1at 1300.797 kb on + strandat 1300.799 kb on - strandat 1300.836 kb on + strandat 1300.878 kb on - strandat 1300.879 kb on + strandat 1300.881 kb on + strandat 1300.882 kb on - strandat 1300.884 kb on - strandat 1300.884 kb on - strandat 1300.958 kb on + strandat 1300.960 kb on + strandat 1301.108 kb on - strandat 1301.444 kb on + strandat 1301.588 kb on - strandat 1303.135 kb on - strandat 1303.321 kb on - strandat 1303.363 kb on - strandat 1303.366 kb on + strandat 1303.369 kb on + strandat 1303.376 kb on - strandat 1303.406 kb on - strandat 1303.440 kb on - strandat 1303.441 kb on + strandat 1303.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,300,797 + +0.1
1,300,799 - -0.1
1,300,836 + -1.1
1,300,878 - -0.0
1,300,879 + -0.2
1,300,881 + +0.1
1,300,882 - +0.7
1,300,884 - +0.2
1,300,884 - +1.5
1,300,958 + -2.5
1,300,960 + +0.3
1,301,108 - +0.3
1,301,444 + -0.8
1,301,588 - -0.6
1,303,135 - -1.5
1,303,321 - -3.0
1,303,363 - -1.4
1,303,366 + +1.0
1,303,369 + -2.8
1,303,376 - +0.1
1,303,406 - +0.2
1,303,440 - -0.5
1,303,441 + -1.7
1,303,444 - +0.1

Or see this region's nucleotide sequence