Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06565

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06555 and MMP_RS06560 are separated by 262 nucleotidesMMP_RS06560 and MMP_RS06565 are separated by 15 nucleotidesMMP_RS06565 and MMP_RS06570 are separated by 22 nucleotidesMMP_RS06570 and MMP_RS06575 are separated by 4 nucleotidesMMP_RS06575 and MMP_RS06580 are separated by 100 nucleotidesMMP_RS06580 and MMP_RS06585 are separated by 71 nucleotides MMP_RS06555: MMP_RS06555 - cupin domain-containing protein, at 1,259,867 to 1,260,421 _RS06555 MMP_RS06560: MMP_RS06560 - hypothetical protein, at 1,260,684 to 1,261,130 _RS06560 MMP_RS06565: MMP_RS06565 - fumarate reductase subunit A, at 1,261,146 to 1,262,765 _RS06565 MMP_RS06570: MMP_RS06570 - DUF190 domain-containing protein, at 1,262,788 to 1,263,117 _RS06570 MMP_RS06575: MMP_RS06575 - fluoride efflux transporter CrcB, at 1,263,122 to 1,263,490 _RS06575 MMP_RS06580: MMP_RS06580 - tRNA-Arg, at 1,263,591 to 1,263,665 _RS06580 MMP_RS06585: MMP_RS06585 - DMT family protein, at 1,263,737 to 1,264,075 _RS06585 Position (kb) 1261 1262 1263Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1260.422 kb on + strandat 1260.422 kb on + strandat 1260.451 kb on + strandat 1260.456 kb on + strandat 1260.460 kb on - strandat 1260.463 kb on + strandat 1260.501 kb on - strandat 1260.501 kb on - strandat 1260.502 kb on + strandat 1260.522 kb on + strandat 1260.535 kb on + strandat 1260.535 kb on + strandat 1260.535 kb on + strandat 1260.549 kb on - strandat 1260.550 kb on + strandat 1260.551 kb on - strandat 1260.552 kb on + strandat 1260.552 kb on + strandat 1260.552 kb on + strandat 1260.564 kb on + strandat 1260.611 kb on - strandat 1260.612 kb on + strandat 1260.612 kb on + strandat 1260.612 kb on + strandat 1260.645 kb on - strandat 1260.648 kb on + strandat 1260.733 kb on - strand, within MMP_RS06560at 1260.733 kb on - strand, within MMP_RS06560at 1260.734 kb on + strand, within MMP_RS06560at 1260.768 kb on - strand, within MMP_RS06560at 1260.768 kb on - strand, within MMP_RS06560at 1260.768 kb on - strand, within MMP_RS06560at 1260.769 kb on + strand, within MMP_RS06560at 1260.779 kb on + strand, within MMP_RS06560at 1260.779 kb on + strand, within MMP_RS06560at 1260.829 kb on - strand, within MMP_RS06560at 1260.829 kb on - strand, within MMP_RS06560at 1260.829 kb on - strand, within MMP_RS06560at 1260.863 kb on - strand, within MMP_RS06560at 1260.864 kb on + strand, within MMP_RS06560at 1260.864 kb on + strand, within MMP_RS06560at 1260.901 kb on - strand, within MMP_RS06560at 1261.054 kb on - strand, within MMP_RS06560at 1261.086 kb on - strandat 1261.756 kb on + strandat 1262.157 kb on + strandat 1262.752 kb on + strandat 1262.830 kb on - strand, within MMP_RS06570at 1262.872 kb on - strand, within MMP_RS06570at 1262.874 kb on - strand, within MMP_RS06570at 1262.894 kb on - strand, within MMP_RS06570at 1263.022 kb on - strand, within MMP_RS06570at 1263.035 kb on + strand, within MMP_RS06570at 1263.216 kb on - strand, within MMP_RS06575at 1263.339 kb on - strand, within MMP_RS06575at 1263.380 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.382 kb on - strand, within MMP_RS06575at 1263.503 kb on - strandat 1263.542 kb on + strandat 1263.543 kb on - strandat 1263.545 kb on - strandat 1263.554 kb on + strandat 1263.739 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,260,422 + -0.4
1,260,422 + +0.2
1,260,451 + +0.2
1,260,456 + -2.5
1,260,460 - -0.3
1,260,463 + -0.5
1,260,501 - -0.2
1,260,501 - +0.6
1,260,502 + +1.2
1,260,522 + -1.2
1,260,535 + +1.5
1,260,535 + +0.8
1,260,535 + +1.1
1,260,549 - +0.6
1,260,550 + -1.0
1,260,551 - +1.3
1,260,552 + +0.3
1,260,552 + -0.8
1,260,552 + +0.9
1,260,564 + +0.5
1,260,611 - +0.8
1,260,612 + +0.8
1,260,612 + +1.1
1,260,612 + +0.2
1,260,645 - -2.1
1,260,648 + -1.7
1,260,733 - MMP_RS06560 0.11 +1.0
1,260,733 - MMP_RS06560 0.11 +0.2
1,260,734 + MMP_RS06560 0.11 +0.4
1,260,768 - MMP_RS06560 0.19 +0.5
1,260,768 - MMP_RS06560 0.19 +0.7
1,260,768 - MMP_RS06560 0.19 -0.9
1,260,769 + MMP_RS06560 0.19 +1.2
1,260,779 + MMP_RS06560 0.21 +0.7
1,260,779 + MMP_RS06560 0.21 +0.3
1,260,829 - MMP_RS06560 0.32 +0.4
1,260,829 - MMP_RS06560 0.32 -0.6
1,260,829 - MMP_RS06560 0.32 +0.4
1,260,863 - MMP_RS06560 0.40 +0.3
1,260,864 + MMP_RS06560 0.40 +0.2
1,260,864 + MMP_RS06560 0.40 -0.0
1,260,901 - MMP_RS06560 0.49 +0.2
1,261,054 - MMP_RS06560 0.83 -0.5
1,261,086 - +0.3
1,261,756 + -1.2
1,262,157 + -3.2
1,262,752 + -5.2
1,262,830 - MMP_RS06570 0.13 +0.5
1,262,872 - MMP_RS06570 0.25 -0.9
1,262,874 - MMP_RS06570 0.26 -0.2
1,262,894 - MMP_RS06570 0.32 +0.1
1,263,022 - MMP_RS06570 0.71 +0.8
1,263,035 + MMP_RS06570 0.75 +0.4
1,263,216 - MMP_RS06575 0.25 +0.8
1,263,339 - MMP_RS06575 0.59 +0.2
1,263,380 - MMP_RS06575 0.70 +0.4
1,263,382 - MMP_RS06575 0.70 -1.0
1,263,382 - MMP_RS06575 0.70 -4.3
1,263,503 - +0.9
1,263,542 + -0.0
1,263,543 - -2.7
1,263,545 - -2.8
1,263,554 + -3.9
1,263,739 + +1.4

Or see this region's nucleotide sequence