Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06265

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06260 and MMP_RS06265 are separated by 47 nucleotidesMMP_RS06265 and MMP_RS06270 are separated by 17 nucleotides MMP_RS06260: MMP_RS06260 - histidinol-phosphate transaminase, at 1,203,152 to 1,204,267 _RS06260 MMP_RS06265: MMP_RS06265 - DUF2100 domain-containing protein, at 1,204,315 to 1,204,974 _RS06265 MMP_RS06270: MMP_RS06270 - TIGR00300 family protein, at 1,204,992 to 1,206,239 _RS06270 Position (kb) 1204 1205Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1204.595 kb on + strandat 1204.826 kb on + strandat 1204.974 kb on - strandat 1205.099 kb on - strandat 1205.118 kb on - strand, within MMP_RS06270at 1205.140 kb on + strand, within MMP_RS06270at 1205.144 kb on + strand, within MMP_RS06270at 1205.222 kb on - strand, within MMP_RS06270at 1205.250 kb on + strand, within MMP_RS06270at 1205.327 kb on - strand, within MMP_RS06270at 1205.342 kb on - strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.343 kb on + strand, within MMP_RS06270at 1205.542 kb on - strand, within MMP_RS06270

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,204,595 + -1.4
1,204,826 + -2.7
1,204,974 - -2.5
1,205,099 - -3.7
1,205,118 - MMP_RS06270 0.10 -2.1
1,205,140 + MMP_RS06270 0.12 -1.2
1,205,144 + MMP_RS06270 0.12 -3.1
1,205,222 - MMP_RS06270 0.18 -3.8
1,205,250 + MMP_RS06270 0.21 -3.5
1,205,327 - MMP_RS06270 0.27 -2.4
1,205,342 - MMP_RS06270 0.28 -3.3
1,205,343 + MMP_RS06270 0.28 -0.3
1,205,343 + MMP_RS06270 0.28 -3.5
1,205,343 + MMP_RS06270 0.28 -0.1
1,205,542 - MMP_RS06270 0.44 -5.3

Or see this region's nucleotide sequence