Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06200 and MMP_RS06205 are separated by 69 nucleotides MMP_RS06205 and MMP_RS06210 are separated by 179 nucleotides
MMP_RS06200: MMP_RS06200 - M24 family metallopeptidase, at 1,190,190 to 1,191,209
_RS06200
MMP_RS06205: MMP_RS06205 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,191,279 to 1,192,568
_RS06205
MMP_RS06210: MMP_RS06210 - type I glutamate--ammonia ligase, at 1,192,748 to 1,194,088
_RS06210
Position (kb)
1191
1192
1193 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1190.327 kb on - strand, within MMP_RS06200 at 1190.327 kb on - strand, within MMP_RS06200 at 1190.403 kb on - strand, within MMP_RS06200 at 1190.404 kb on + strand, within MMP_RS06200 at 1190.429 kb on - strand, within MMP_RS06200 at 1190.520 kb on + strand, within MMP_RS06200 at 1190.573 kb on - strand, within MMP_RS06200 at 1190.708 kb on - strand, within MMP_RS06200 at 1190.789 kb on - strand, within MMP_RS06200 at 1190.790 kb on + strand, within MMP_RS06200 at 1190.793 kb on + strand, within MMP_RS06200 at 1190.797 kb on - strand, within MMP_RS06200 at 1190.797 kb on - strand, within MMP_RS06200 at 1190.798 kb on + strand, within MMP_RS06200 at 1190.895 kb on - strand, within MMP_RS06200 at 1190.970 kb on + strand, within MMP_RS06200 at 1191.017 kb on + strand, within MMP_RS06200 at 1191.055 kb on + strand, within MMP_RS06200 at 1191.087 kb on + strand, within MMP_RS06200 at 1191.129 kb on - strand at 1191.129 kb on - strand at 1191.149 kb on - strand at 1191.149 kb on - strand at 1191.150 kb on + strand at 1191.163 kb on + strand at 1191.231 kb on - strand at 1191.241 kb on + strand at 1191.241 kb on + strand at 1191.252 kb on - strand at 1191.252 kb on - strand at 1191.286 kb on + strand at 1191.318 kb on + strand at 1191.881 kb on - strand at 1192.246 kb on + strand at 1192.250 kb on - strand at 1192.299 kb on + strand at 1192.326 kb on + strand at 1192.583 kb on - strand at 1192.604 kb on - strand at 1192.604 kb on - strand at 1192.642 kb on + strand at 1192.652 kb on + strand at 1192.663 kb on - strand at 1192.673 kb on - strand at 1192.673 kb on - strand at 1192.673 kb on - strand at 1192.674 kb on + strand at 1192.897 kb on + strand at 1193.305 kb on + strand at 1193.557 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,190,327 - MMP_RS06200 0.13 -0.4 1,190,327 - MMP_RS06200 0.13 -0.3 1,190,403 - MMP_RS06200 0.21 +0.2 1,190,404 + MMP_RS06200 0.21 +0.7 1,190,429 - MMP_RS06200 0.23 -3.1 1,190,520 + MMP_RS06200 0.32 +0.3 1,190,573 - MMP_RS06200 0.38 -1.0 1,190,708 - MMP_RS06200 0.51 -0.2 1,190,789 - MMP_RS06200 0.59 -0.5 1,190,790 + MMP_RS06200 0.59 -0.7 1,190,793 + MMP_RS06200 0.59 +0.4 1,190,797 - MMP_RS06200 0.60 -0.6 1,190,797 - MMP_RS06200 0.60 +0.2 1,190,798 + MMP_RS06200 0.60 +0.5 1,190,895 - MMP_RS06200 0.69 -1.0 1,190,970 + MMP_RS06200 0.76 -0.5 1,191,017 + MMP_RS06200 0.81 +0.4 1,191,055 + MMP_RS06200 0.85 +0.4 1,191,087 + MMP_RS06200 0.88 +1.1 1,191,129 - -0.2 1,191,129 - +0.2 1,191,149 - -0.0 1,191,149 - -0.4 1,191,150 + -0.1 1,191,163 + +1.0 1,191,231 - +0.6 1,191,241 + +1.1 1,191,241 + +0.8 1,191,252 - +0.5 1,191,252 - +0.1 1,191,286 + +0.3 1,191,318 + -1.7 1,191,881 - -2.7 1,192,246 + -1.7 1,192,250 - -1.9 1,192,299 + -2.7 1,192,326 + -1.7 1,192,583 - -0.5 1,192,604 - -3.6 1,192,604 - -2.9 1,192,642 + -3.7 1,192,652 + -0.1 1,192,663 - -0.4 1,192,673 - +0.2 1,192,673 - -1.0 1,192,673 - +0.1 1,192,674 + +0.3 1,192,897 + -0.8 1,193,305 + -0.6 1,193,557 + -1.9
Or see this region's nucleotide sequence