Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06205

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06200 and MMP_RS06205 are separated by 69 nucleotidesMMP_RS06205 and MMP_RS06210 are separated by 179 nucleotides MMP_RS06200: MMP_RS06200 - M24 family metallopeptidase, at 1,190,190 to 1,191,209 _RS06200 MMP_RS06205: MMP_RS06205 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,191,279 to 1,192,568 _RS06205 MMP_RS06210: MMP_RS06210 - type I glutamate--ammonia ligase, at 1,192,748 to 1,194,088 _RS06210 Position (kb) 1191 1192 1193Strain fitness (log2 ratio) -3 -2 -1 0 1at 1190.327 kb on - strand, within MMP_RS06200at 1190.327 kb on - strand, within MMP_RS06200at 1190.403 kb on - strand, within MMP_RS06200at 1190.404 kb on + strand, within MMP_RS06200at 1190.429 kb on - strand, within MMP_RS06200at 1190.520 kb on + strand, within MMP_RS06200at 1190.573 kb on - strand, within MMP_RS06200at 1190.708 kb on - strand, within MMP_RS06200at 1190.789 kb on - strand, within MMP_RS06200at 1190.790 kb on + strand, within MMP_RS06200at 1190.793 kb on + strand, within MMP_RS06200at 1190.797 kb on - strand, within MMP_RS06200at 1190.797 kb on - strand, within MMP_RS06200at 1190.798 kb on + strand, within MMP_RS06200at 1190.895 kb on - strand, within MMP_RS06200at 1190.970 kb on + strand, within MMP_RS06200at 1191.017 kb on + strand, within MMP_RS06200at 1191.055 kb on + strand, within MMP_RS06200at 1191.087 kb on + strand, within MMP_RS06200at 1191.129 kb on - strandat 1191.129 kb on - strandat 1191.149 kb on - strandat 1191.149 kb on - strandat 1191.150 kb on + strandat 1191.163 kb on + strandat 1191.231 kb on - strandat 1191.241 kb on + strandat 1191.241 kb on + strandat 1191.252 kb on - strandat 1191.252 kb on - strandat 1191.286 kb on + strandat 1191.318 kb on + strandat 1191.881 kb on - strandat 1192.246 kb on + strandat 1192.250 kb on - strandat 1192.299 kb on + strandat 1192.326 kb on + strandat 1192.583 kb on - strandat 1192.604 kb on - strandat 1192.604 kb on - strandat 1192.642 kb on + strandat 1192.652 kb on + strandat 1192.663 kb on - strandat 1192.673 kb on - strandat 1192.673 kb on - strandat 1192.673 kb on - strandat 1192.674 kb on + strandat 1192.897 kb on + strandat 1193.305 kb on + strandat 1193.557 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,190,327 - MMP_RS06200 0.13 -0.4
1,190,327 - MMP_RS06200 0.13 -0.3
1,190,403 - MMP_RS06200 0.21 +0.2
1,190,404 + MMP_RS06200 0.21 +0.7
1,190,429 - MMP_RS06200 0.23 -3.1
1,190,520 + MMP_RS06200 0.32 +0.3
1,190,573 - MMP_RS06200 0.38 -1.0
1,190,708 - MMP_RS06200 0.51 -0.2
1,190,789 - MMP_RS06200 0.59 -0.5
1,190,790 + MMP_RS06200 0.59 -0.7
1,190,793 + MMP_RS06200 0.59 +0.4
1,190,797 - MMP_RS06200 0.60 -0.6
1,190,797 - MMP_RS06200 0.60 +0.2
1,190,798 + MMP_RS06200 0.60 +0.5
1,190,895 - MMP_RS06200 0.69 -1.0
1,190,970 + MMP_RS06200 0.76 -0.5
1,191,017 + MMP_RS06200 0.81 +0.4
1,191,055 + MMP_RS06200 0.85 +0.4
1,191,087 + MMP_RS06200 0.88 +1.1
1,191,129 - -0.2
1,191,129 - +0.2
1,191,149 - -0.0
1,191,149 - -0.4
1,191,150 + -0.1
1,191,163 + +1.0
1,191,231 - +0.6
1,191,241 + +1.1
1,191,241 + +0.8
1,191,252 - +0.5
1,191,252 - +0.1
1,191,286 + +0.3
1,191,318 + -1.7
1,191,881 - -2.7
1,192,246 + -1.7
1,192,250 - -1.9
1,192,299 + -2.7
1,192,326 + -1.7
1,192,583 - -0.5
1,192,604 - -3.6
1,192,604 - -2.9
1,192,642 + -3.7
1,192,652 + -0.1
1,192,663 - -0.4
1,192,673 - +0.2
1,192,673 - -1.0
1,192,673 - +0.1
1,192,674 + +0.3
1,192,897 + -0.8
1,193,305 + -0.6
1,193,557 + -1.9

Or see this region's nucleotide sequence