Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05880

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05870 and MMP_RS05875 are separated by 209 nucleotidesMMP_RS05875 and MMP_RS05880 overlap by 11 nucleotidesMMP_RS05880 and MMP_RS05885 are separated by 175 nucleotidesMMP_RS05885 and MMP_RS05890 are separated by 263 nucleotides MMP_RS05870: MMP_RS05870 - Lrp/AsnC family transcriptional regulator, at 1,127,432 to 1,127,854 _RS05870 MMP_RS05875: MMP_RS05875 - hydroxyethylthiazole kinase, at 1,128,064 to 1,128,864 _RS05875 MMP_RS05880: MMP_RS05880 - thiamine phosphate synthase, at 1,128,854 to 1,129,477 _RS05880 MMP_RS05885: MMP_RS05885 - ferredoxin family protein, at 1,129,653 to 1,129,898 _RS05885 MMP_RS05890: MMP_RS05890 - ATP-dependent helicase, at 1,130,162 to 1,132,729 _RS05890 Position (kb) 1128 1129 1130Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1127.875 kb on - strandat 1127.875 kb on - strandat 1127.876 kb on + strandat 1127.876 kb on + strandat 1127.929 kb on - strandat 1127.930 kb on + strandat 1127.932 kb on + strandat 1127.933 kb on - strandat 1127.934 kb on + strandat 1127.952 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.015 kb on - strandat 1128.018 kb on + strandat 1128.018 kb on + strandat 1128.030 kb on + strandat 1128.040 kb on + strandat 1128.074 kb on - strandat 1128.075 kb on + strandat 1128.134 kb on + strandat 1128.140 kb on - strandat 1128.477 kb on + strand, within MMP_RS05875at 1128.490 kb on - strand, within MMP_RS05875at 1128.578 kb on - strand, within MMP_RS05875at 1128.579 kb on + strand, within MMP_RS05875at 1128.658 kb on + strand, within MMP_RS05875at 1129.275 kb on - strandat 1129.470 kb on - strandat 1129.514 kb on + strandat 1129.600 kb on + strandat 1129.606 kb on - strandat 1129.607 kb on + strandat 1129.660 kb on - strandat 1129.934 kb on - strandat 1129.937 kb on + strandat 1129.937 kb on + strandat 1129.942 kb on - strandat 1129.986 kb on + strandat 1130.030 kb on + strandat 1130.066 kb on + strandat 1130.191 kb on - strandat 1130.195 kb on + strandat 1130.311 kb on - strandat 1130.364 kb on + strandat 1130.373 kb on + strandat 1130.374 kb on - strandat 1130.374 kb on - strandat 1130.375 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,127,875 - +0.1
1,127,875 - -0.6
1,127,876 + -0.1
1,127,876 + +1.3
1,127,929 - +0.9
1,127,930 + +0.2
1,127,932 + +0.2
1,127,933 - +1.0
1,127,934 + +0.1
1,127,952 - -0.6
1,128,015 - +0.6
1,128,015 - -0.6
1,128,015 - +0.4
1,128,015 - +0.4
1,128,018 + -0.4
1,128,018 + +0.6
1,128,030 + +0.6
1,128,040 + +1.4
1,128,074 - -4.2
1,128,075 + +0.1
1,128,134 + +0.6
1,128,140 - -4.1
1,128,477 + MMP_RS05875 0.52 -0.2
1,128,490 - MMP_RS05875 0.53 -3.3
1,128,578 - MMP_RS05875 0.64 -2.8
1,128,579 + MMP_RS05875 0.64 +0.2
1,128,658 + MMP_RS05875 0.74 +0.7
1,129,275 - -4.9
1,129,470 - -2.8
1,129,514 + +1.3
1,129,600 + +0.0
1,129,606 - -0.4
1,129,607 + +0.2
1,129,660 - -0.6
1,129,934 - -0.6
1,129,937 + +0.5
1,129,937 + +0.5
1,129,942 - +0.6
1,129,986 + +0.6
1,130,030 + -0.1
1,130,066 + +0.5
1,130,191 - +0.2
1,130,195 + -0.3
1,130,311 - +2.1
1,130,364 + +0.1
1,130,373 + -0.1
1,130,374 - +0.3
1,130,374 - +0.3
1,130,375 + -0.2

Or see this region's nucleotide sequence