Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05855

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05850 and MMP_RS05855 are separated by 122 nucleotidesMMP_RS05855 and MMP_RS05860 are separated by 183 nucleotides MMP_RS05850: MMP_RS05850 - Ldh family oxidoreductase, at 1,122,832 to 1,123,875 _RS05850 MMP_RS05855: MMP_RS05855 - FprA family A-type flavoprotein, at 1,123,998 to 1,125,221 _RS05855 MMP_RS05860: MMP_RS05860 - FprA family A-type flavoprotein, at 1,125,405 to 1,126,625 _RS05860 Position (kb) 1123 1124 1125 1126Strain fitness (log2 ratio) -1 0 1at 1123.047 kb on + strand, within MMP_RS05850at 1123.173 kb on - strand, within MMP_RS05850at 1123.437 kb on + strand, within MMP_RS05850at 1123.764 kb on - strand, within MMP_RS05850at 1123.765 kb on + strand, within MMP_RS05850at 1123.808 kb on - strandat 1123.809 kb on + strandat 1123.809 kb on + strandat 1123.809 kb on + strandat 1123.809 kb on + strandat 1123.809 kb on + strandat 1123.812 kb on + strandat 1123.812 kb on + strandat 1123.816 kb on + strandat 1123.851 kb on - strandat 1123.854 kb on - strandat 1123.864 kb on - strandat 1123.904 kb on + strandat 1123.907 kb on + strandat 1123.933 kb on + strandat 1123.951 kb on + strandat 1123.951 kb on + strandat 1123.956 kb on + strandat 1123.961 kb on - strandat 1125.132 kb on - strandat 1125.141 kb on - strandat 1125.355 kb on + strandat 1125.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,123,047 + MMP_RS05850 0.21 +0.9
1,123,173 - MMP_RS05850 0.33 +0.4
1,123,437 + MMP_RS05850 0.58 -0.7
1,123,764 - MMP_RS05850 0.89 -0.0
1,123,765 + MMP_RS05850 0.89 +0.0
1,123,808 - +0.1
1,123,809 + -0.2
1,123,809 + +1.2
1,123,809 + -0.8
1,123,809 + +0.4
1,123,809 + +0.5
1,123,812 + +0.5
1,123,812 + -0.1
1,123,816 + -0.1
1,123,851 - +0.4
1,123,854 - +0.2
1,123,864 - +0.2
1,123,904 + +0.2
1,123,907 + -0.2
1,123,933 + +0.6
1,123,951 + +0.8
1,123,951 + -1.7
1,123,956 + +0.5
1,123,961 - +0.5
1,125,132 - +0.4
1,125,141 - +0.7
1,125,355 + +0.0
1,125,371 + -0.2

Or see this region's nucleotide sequence