Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05730

Experiment: H2 N-free with 10mM L-Aspartic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS05720 and MMP_RS05725 are separated by 13 nucleotidesMMP_RS05725 and MMP_RS05730 are separated by 11 nucleotidesMMP_RS05730 and MMP_RS05735 are separated by 28 nucleotides MMP_RS05720: MMP_RS05720 - signal recognition particle subunit SRP19/SEC65 family protein, at 1,097,784 to 1,098,053 _RS05720 MMP_RS05725: MMP_RS05725 - magnesium/cobalt transporter CorA, at 1,098,067 to 1,099,017 _RS05725 MMP_RS05730: MMP_RS05730 - DUF373 family protein, at 1,099,029 to 1,100,138 _RS05730 MMP_RS05735: MMP_RS05735 - oligosaccharide repeat unit polymerase family protein, at 1,100,167 to 1,101,342 _RS05735 Position (kb) 1099 1100 1101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1098.106 kb on - strandat 1098.176 kb on - strandat 1098.195 kb on + strandat 1098.343 kb on - strandat 1098.441 kb on - strandat 1098.450 kb on - strandat 1098.490 kb on - strandat 1098.534 kb on - strandat 1098.589 kb on - strandat 1098.594 kb on - strandat 1098.616 kb on - strandat 1098.803 kb on - strandat 1098.806 kb on - strandat 1098.811 kb on + strandat 1098.939 kb on - strandat 1098.955 kb on + strandat 1098.958 kb on - strandat 1098.959 kb on + strandat 1099.071 kb on - strandat 1099.072 kb on + strandat 1099.087 kb on + strandat 1099.092 kb on - strandat 1099.101 kb on - strandat 1099.101 kb on - strandat 1099.101 kb on - strandat 1099.105 kb on - strandat 1099.106 kb on + strandat 1099.106 kb on + strandat 1099.106 kb on + strandat 1099.287 kb on - strandat 1099.365 kb on - strandat 1099.405 kb on + strandat 1099.663 kb on - strandat 1099.781 kb on + strandat 1099.810 kb on + strandat 1099.863 kb on - strandat 1099.863 kb on - strandat 1099.863 kb on - strandat 1099.864 kb on + strandat 1099.864 kb on + strandat 1099.864 kb on + strandat 1100.030 kb on - strandat 1100.295 kb on + strandat 1100.310 kb on - strandat 1100.311 kb on + strandat 1100.332 kb on - strandat 1100.894 kb on + strandat 1100.960 kb on - strandat 1100.980 kb on - strandat 1101.022 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
remove
1,098,106 - -1.9
1,098,176 - -2.6
1,098,195 + -4.5
1,098,343 - -0.6
1,098,441 - -3.8
1,098,450 - -3.8
1,098,490 - -2.1
1,098,534 - -0.6
1,098,589 - -2.6
1,098,594 - -3.1
1,098,616 - -1.3
1,098,803 - -2.5
1,098,806 - -4.5
1,098,811 + -0.6
1,098,939 - -2.8
1,098,955 + -5.2
1,098,958 - -1.6
1,098,959 + -2.5
1,099,071 - -2.6
1,099,072 + -5.0
1,099,087 + -5.5
1,099,092 - -2.1
1,099,101 - -2.1
1,099,101 - -3.7
1,099,101 - -4.9
1,099,105 - -0.7
1,099,106 + -1.7
1,099,106 + -2.8
1,099,106 + -1.8
1,099,287 - -3.0
1,099,365 - -4.3
1,099,405 + -4.8
1,099,663 - -2.5
1,099,781 + -1.7
1,099,810 + -0.6
1,099,863 - -2.5
1,099,863 - -4.5
1,099,863 - -3.3
1,099,864 + -3.3
1,099,864 + -1.1
1,099,864 + -2.3
1,100,030 - +0.3
1,100,295 + -4.9
1,100,310 - -3.3
1,100,311 + -2.5
1,100,332 - -4.6
1,100,894 + +0.1
1,100,960 - -0.2
1,100,980 - -2.2
1,101,022 - -3.5

Or see this region's nucleotide sequence