Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05710 and MMP_RS05715 are separated by 12 nucleotides MMP_RS05715 and MMP_RS05720 are separated by 0 nucleotides MMP_RS05720 and MMP_RS05725 are separated by 13 nucleotides MMP_RS05725 and MMP_RS05730 are separated by 11 nucleotides
MMP_RS05710: MMP_RS05710 - ADP-forming succinate--CoA ligase subunit beta, at 1,096,371 to 1,097,459
_RS05710
MMP_RS05715: MMP_RS05715 - hypothetical protein, at 1,097,472 to 1,097,783
_RS05715
MMP_RS05720: MMP_RS05720 - signal recognition particle subunit SRP19/SEC65 family protein, at 1,097,784 to 1,098,053
_RS05720
MMP_RS05725: MMP_RS05725 - magnesium/cobalt transporter CorA, at 1,098,067 to 1,099,017
_RS05725
MMP_RS05730: MMP_RS05730 - DUF373 family protein, at 1,099,029 to 1,100,138
_RS05730
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1097.330 kb on - strand at 1097.453 kb on - strand at 1097.529 kb on + strand, within MMP_RS05715 at 1097.541 kb on - strand, within MMP_RS05715 at 1097.542 kb on + strand, within MMP_RS05715 at 1097.544 kb on + strand, within MMP_RS05715 at 1097.562 kb on - strand, within MMP_RS05715 at 1097.562 kb on - strand, within MMP_RS05715 at 1097.563 kb on + strand, within MMP_RS05715 at 1097.563 kb on + strand, within MMP_RS05715 at 1097.584 kb on + strand, within MMP_RS05715 at 1097.603 kb on + strand, within MMP_RS05715 at 1097.653 kb on + strand, within MMP_RS05715 at 1097.799 kb on + strand at 1097.799 kb on + strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.802 kb on - strand at 1097.855 kb on - strand, within MMP_RS05720 at 1097.910 kb on + strand, within MMP_RS05720 at 1097.912 kb on + strand, within MMP_RS05720 at 1098.024 kb on + strand, within MMP_RS05720 at 1098.106 kb on - strand at 1098.176 kb on - strand at 1098.195 kb on + strand at 1098.343 kb on - strand at 1098.441 kb on - strand at 1098.450 kb on - strand at 1098.490 kb on - strand at 1098.534 kb on - strand at 1098.589 kb on - strand at 1098.594 kb on - strand at 1098.616 kb on - strand at 1098.803 kb on - strand at 1098.806 kb on - strand at 1098.811 kb on + strand at 1098.939 kb on - strand at 1098.955 kb on + strand at 1098.958 kb on - strand at 1098.959 kb on + strand at 1099.071 kb on - strand at 1099.072 kb on + strand at 1099.087 kb on + strand at 1099.092 kb on - strand at 1099.101 kb on - strand at 1099.101 kb on - strand at 1099.101 kb on - strand at 1099.105 kb on - strand at 1099.106 kb on + strand at 1099.106 kb on + strand at 1099.106 kb on + strand at 1099.287 kb on - strand at 1099.365 kb on - strand at 1099.405 kb on + strand at 1099.663 kb on - strand at 1099.781 kb on + strand at 1099.810 kb on + strand at 1099.863 kb on - strand at 1099.863 kb on - strand at 1099.863 kb on - strand at 1099.864 kb on + strand at 1099.864 kb on + strand at 1099.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,097,330 - -4.5 1,097,453 - +0.1 1,097,529 + MMP_RS05715 0.18 -0.1 1,097,541 - MMP_RS05715 0.22 +0.3 1,097,542 + MMP_RS05715 0.22 -0.1 1,097,544 + MMP_RS05715 0.23 +0.7 1,097,562 - MMP_RS05715 0.29 +1.1 1,097,562 - MMP_RS05715 0.29 +1.5 1,097,563 + MMP_RS05715 0.29 +0.6 1,097,563 + MMP_RS05715 0.29 +0.5 1,097,584 + MMP_RS05715 0.36 -0.6 1,097,603 + MMP_RS05715 0.42 +0.2 1,097,653 + MMP_RS05715 0.58 +1.0 1,097,799 + +0.2 1,097,799 + +0.2 1,097,802 - -0.3 1,097,802 - +1.1 1,097,802 - -1.0 1,097,802 - -0.1 1,097,855 - MMP_RS05720 0.26 +0.3 1,097,910 + MMP_RS05720 0.47 +2.1 1,097,912 + MMP_RS05720 0.47 +0.0 1,098,024 + MMP_RS05720 0.89 +0.1 1,098,106 - -1.9 1,098,176 - -2.6 1,098,195 + -4.5 1,098,343 - -0.6 1,098,441 - -3.8 1,098,450 - -3.8 1,098,490 - -2.1 1,098,534 - -0.6 1,098,589 - -2.6 1,098,594 - -3.1 1,098,616 - -1.3 1,098,803 - -2.5 1,098,806 - -4.5 1,098,811 + -0.6 1,098,939 - -2.8 1,098,955 + -5.2 1,098,958 - -1.6 1,098,959 + -2.5 1,099,071 - -2.6 1,099,072 + -5.0 1,099,087 + -5.5 1,099,092 - -2.1 1,099,101 - -2.1 1,099,101 - -3.7 1,099,101 - -4.9 1,099,105 - -0.7 1,099,106 + -1.7 1,099,106 + -2.8 1,099,106 + -1.8 1,099,287 - -3.0 1,099,365 - -4.3 1,099,405 + -4.8 1,099,663 - -2.5 1,099,781 + -1.7 1,099,810 + -0.6 1,099,863 - -2.5 1,099,863 - -4.5 1,099,863 - -3.3 1,099,864 + -3.3 1,099,864 + -1.1 1,099,864 + -2.3
Or see this region's nucleotide sequence