Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05570

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05565 and MMP_RS05570 are separated by 8 nucleotidesMMP_RS05570 and MMP_RS05575 are separated by 94 nucleotides MMP_RS05565: MMP_RS05565 - NTP transferase domain-containing protein, at 1,065,921 to 1,067,156 _RS05565 MMP_RS05570: MMP_RS05570 - phosphoglucosamine mutase, at 1,067,165 to 1,068,508 _RS05570 MMP_RS05575: MMP_RS05575 - hypothetical protein, at 1,068,603 to 1,069,547 _RS05575 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1066.258 kb on + strandat 1066.685 kb on - strandat 1066.688 kb on - strandat 1066.789 kb on + strandat 1066.884 kb on - strandat 1066.945 kb on - strandat 1066.972 kb on - strandat 1066.973 kb on + strandat 1067.012 kb on + strandat 1067.048 kb on - strandat 1067.056 kb on + strandat 1067.121 kb on + strandat 1067.504 kb on + strandat 1068.127 kb on - strandat 1068.127 kb on - strandat 1068.155 kb on - strandat 1068.323 kb on + strandat 1068.326 kb on - strandat 1068.327 kb on + strandat 1068.327 kb on + strandat 1068.375 kb on + strandat 1068.541 kb on + strandat 1068.548 kb on - strandat 1068.549 kb on + strandat 1068.549 kb on + strandat 1068.549 kb on + strandat 1068.568 kb on - strandat 1068.569 kb on + strandat 1068.572 kb on - strandat 1068.573 kb on + strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.574 kb on - strandat 1068.641 kb on - strandat 1068.676 kb on - strandat 1068.683 kb on - strandat 1068.687 kb on - strandat 1068.687 kb on - strandat 1068.791 kb on - strand, within MMP_RS05575at 1068.827 kb on - strand, within MMP_RS05575at 1068.851 kb on + strand, within MMP_RS05575at 1069.044 kb on - strand, within MMP_RS05575at 1069.045 kb on + strand, within MMP_RS05575at 1069.071 kb on + strand, within MMP_RS05575at 1069.071 kb on + strand, within MMP_RS05575at 1069.076 kb on + strand, within MMP_RS05575at 1069.084 kb on + strand, within MMP_RS05575at 1069.088 kb on - strand, within MMP_RS05575at 1069.091 kb on + strand, within MMP_RS05575at 1069.091 kb on + strand, within MMP_RS05575at 1069.095 kb on + strand, within MMP_RS05575at 1069.105 kb on - strand, within MMP_RS05575at 1069.120 kb on - strand, within MMP_RS05575at 1069.261 kb on + strand, within MMP_RS05575at 1069.323 kb on - strand, within MMP_RS05575at 1069.324 kb on + strand, within MMP_RS05575at 1069.351 kb on + strand, within MMP_RS05575at 1069.352 kb on - strand, within MMP_RS05575at 1069.352 kb on - strand, within MMP_RS05575at 1069.355 kb on - strand, within MMP_RS05575at 1069.356 kb on + strand, within MMP_RS05575at 1069.415 kb on + strand, within MMP_RS05575at 1069.444 kb on - strand, within MMP_RS05575at 1069.450 kb on - strand, within MMP_RS05575at 1069.451 kb on + strand, within MMP_RS05575at 1069.468 kb on - strandat 1069.469 kb on + strandat 1069.469 kb on + strandat 1069.473 kb on - strandat 1069.474 kb on + strandat 1069.474 kb on + strandat 1069.478 kb on - strandat 1069.479 kb on + strandat 1069.496 kb on - strandat 1069.496 kb on - strandat 1069.496 kb on - strandat 1069.500 kb on - strandat 1069.501 kb on + strandat 1069.501 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,066,258 + -2.4
1,066,685 - -2.6
1,066,688 - -2.1
1,066,789 + -3.0
1,066,884 - +0.9
1,066,945 - -2.9
1,066,972 - -2.8
1,066,973 + -4.1
1,067,012 + -1.3
1,067,048 - -1.9
1,067,056 + -1.7
1,067,121 + -0.6
1,067,504 + -0.9
1,068,127 - -1.0
1,068,127 - +0.4
1,068,155 - -0.4
1,068,323 + -1.6
1,068,326 - -1.3
1,068,327 + +0.1
1,068,327 + -3.3
1,068,375 + -0.4
1,068,541 + -0.1
1,068,548 - +1.5
1,068,549 + -4.4
1,068,549 + -0.8
1,068,549 + -0.9
1,068,568 - +0.4
1,068,569 + +0.9
1,068,572 - +2.9
1,068,573 + -0.6
1,068,574 - -0.2
1,068,574 - -1.3
1,068,574 - -0.3
1,068,574 - -0.1
1,068,641 - +0.4
1,068,676 - -0.2
1,068,683 - +0.4
1,068,687 - -0.0
1,068,687 - -0.8
1,068,791 - MMP_RS05575 0.20 +0.6
1,068,827 - MMP_RS05575 0.24 -1.0
1,068,851 + MMP_RS05575 0.26 -2.1
1,069,044 - MMP_RS05575 0.47 -0.2
1,069,045 + MMP_RS05575 0.47 +0.7
1,069,071 + MMP_RS05575 0.50 +0.7
1,069,071 + MMP_RS05575 0.50 -0.2
1,069,076 + MMP_RS05575 0.50 +2.2
1,069,084 + MMP_RS05575 0.51 -0.6
1,069,088 - MMP_RS05575 0.51 +0.2
1,069,091 + MMP_RS05575 0.52 -0.1
1,069,091 + MMP_RS05575 0.52 +0.4
1,069,095 + MMP_RS05575 0.52 -1.2
1,069,105 - MMP_RS05575 0.53 -1.0
1,069,120 - MMP_RS05575 0.55 +0.6
1,069,261 + MMP_RS05575 0.70 -1.0
1,069,323 - MMP_RS05575 0.76 +1.3
1,069,324 + MMP_RS05575 0.76 -0.2
1,069,351 + MMP_RS05575 0.79 -0.1
1,069,352 - MMP_RS05575 0.79 +0.4
1,069,352 - MMP_RS05575 0.79 +0.5
1,069,355 - MMP_RS05575 0.80 +0.4
1,069,356 + MMP_RS05575 0.80 +0.9
1,069,415 + MMP_RS05575 0.86 -0.8
1,069,444 - MMP_RS05575 0.89 -0.0
1,069,450 - MMP_RS05575 0.90 +1.4
1,069,451 + MMP_RS05575 0.90 +0.4
1,069,468 - +0.4
1,069,469 + +0.4
1,069,469 + -0.1
1,069,473 - -0.2
1,069,474 + +0.4
1,069,474 + +1.2
1,069,478 - +0.3
1,069,479 + -1.5
1,069,496 - +0.6
1,069,496 - -1.4
1,069,496 - +0.3
1,069,500 - +0.5
1,069,501 + -0.1
1,069,501 + +0.0

Or see this region's nucleotide sequence