Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05400

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05390 and MMP_RS05395 are separated by 21 nucleotidesMMP_RS05395 and MMP_RS05400 are separated by 15 nucleotidesMMP_RS05400 and MMP_RS05405 are separated by 34 nucleotides MMP_RS05390: MMP_RS05390 - V-type ATP synthase subunit C, at 1,035,217 to 1,036,392 _RS05390 MMP_RS05395: MMP_RS05395 - V-type ATP synthase subunit F, at 1,036,414 to 1,036,713 _RS05395 MMP_RS05400: MMP_RS05400 - ATP synthase subunit A, at 1,036,729 to 1,038,489 _RS05400 MMP_RS05405: MMP_RS05405 - V-type ATP synthase subunit B, at 1,038,524 to 1,039,912 _RS05405 Position (kb) 1036 1037 1038 1039Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1036.040 kb on + strandat 1036.330 kb on + strandat 1036.597 kb on + strandat 1036.680 kb on + strandat 1037.140 kb on + strandat 1038.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,036,040 + -4.7
1,036,330 + -4.3
1,036,597 + -1.9
1,036,680 + +1.8
1,037,140 + -4.2
1,038,038 + -4.3

Or see this region's nucleotide sequence