Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05385

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05375 and MMP_RS05380 are separated by 52 nucleotidesMMP_RS05380 and MMP_RS05385 are separated by 60 nucleotidesMMP_RS05385 and MMP_RS05390 are separated by 10 nucleotides MMP_RS05375: MMP_RS05375 - V-type ATP synthase subunit I, at 1,031,753 to 1,033,813 _RS05375 MMP_RS05380: MMP_RS05380 - ATP synthase subunit K, at 1,033,866 to 1,034,534 _RS05380 MMP_RS05385: MMP_RS05385 - ATP synthase subunit E, at 1,034,595 to 1,035,206 _RS05385 MMP_RS05390: MMP_RS05390 - V-type ATP synthase subunit C, at 1,035,217 to 1,036,392 _RS05390 Position (kb) 1034 1035 1036Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1033.639 kb on + strandat 1033.831 kb on + strandat 1033.899 kb on + strandat 1034.959 kb on - strandat 1035.222 kb on + strandat 1035.419 kb on - strandat 1035.674 kb on + strandat 1036.040 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,033,639 + -3.0
1,033,831 + -4.6
1,033,899 + -1.2
1,034,959 - -2.2
1,035,222 + -4.5
1,035,419 - -3.9
1,035,674 + +0.8
1,036,040 + -4.7

Or see this region's nucleotide sequence