Experiment: H2 N-free with 10mM L-Aspartic Acid
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05365 and MMP_RS05370 are separated by 417 nucleotides MMP_RS05370 and MMP_RS05375 are separated by 33 nucleotides MMP_RS05375 and MMP_RS05380 are separated by 52 nucleotides MMP_RS05380 and MMP_RS05385 are separated by 60 nucleotides
MMP_RS05365: MMP_RS05365 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,030,514 to 1,030,993
_RS05365
MMP_RS05370: MMP_RS05370 - hypothetical protein, at 1,031,411 to 1,031,719
_RS05370
MMP_RS05375: MMP_RS05375 - V-type ATP synthase subunit I, at 1,031,753 to 1,033,813
_RS05375
MMP_RS05380: MMP_RS05380 - ATP synthase subunit K, at 1,033,866 to 1,034,534
_RS05380
MMP_RS05385: MMP_RS05385 - ATP synthase subunit E, at 1,034,595 to 1,035,206
_RS05385
Position (kb)
1031
1032
1033
1034 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1030.822 kb on + strand, within MMP_RS05365 at 1030.939 kb on + strand, within MMP_RS05365 at 1030.988 kb on + strand at 1031.128 kb on + strand at 1031.129 kb on - strand at 1031.130 kb on + strand at 1031.132 kb on - strand at 1031.140 kb on - strand at 1031.141 kb on + strand at 1031.227 kb on - strand at 1031.227 kb on - strand at 1031.269 kb on - strand at 1031.269 kb on - strand at 1031.270 kb on + strand at 1031.270 kb on + strand at 1031.270 kb on + strand at 1031.273 kb on - strand at 1031.323 kb on + strand at 1031.323 kb on + strand at 1031.349 kb on - strand at 1031.358 kb on + strand at 1031.368 kb on + strand at 1031.422 kb on + strand at 1031.422 kb on + strand at 1031.896 kb on - strand at 1031.922 kb on + strand at 1031.960 kb on + strand at 1032.197 kb on - strand at 1032.251 kb on - strand at 1032.251 kb on - strand at 1032.251 kb on - strand at 1032.252 kb on + strand at 1032.284 kb on + strand at 1033.023 kb on - strand at 1033.099 kb on - strand at 1033.128 kb on + strand at 1033.173 kb on + strand at 1033.173 kb on + strand at 1033.173 kb on + strand at 1033.265 kb on + strand at 1033.639 kb on + strand at 1033.831 kb on + strand at 1033.899 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid remove 1,030,822 + MMP_RS05365 0.64 +0.8 1,030,939 + MMP_RS05365 0.89 +0.9 1,030,988 + +0.1 1,031,128 + +0.4 1,031,129 - -0.4 1,031,130 + -0.3 1,031,132 - -1.7 1,031,140 - -2.1 1,031,141 + -0.8 1,031,227 - +0.2 1,031,227 - -0.2 1,031,269 - -0.1 1,031,269 - -0.8 1,031,270 + -1.2 1,031,270 + -0.2 1,031,270 + -0.4 1,031,273 - -0.6 1,031,323 + -2.1 1,031,323 + -1.4 1,031,349 - -1.7 1,031,358 + -4.1 1,031,368 + -2.7 1,031,422 + -4.1 1,031,422 + -1.4 1,031,896 - -3.3 1,031,922 + -3.5 1,031,960 + -3.0 1,032,197 - -2.7 1,032,251 - -2.9 1,032,251 - -1.7 1,032,251 - -3.6 1,032,252 + -3.9 1,032,284 + -3.9 1,033,023 - -4.0 1,033,099 - -3.6 1,033,128 + -3.2 1,033,173 + -3.3 1,033,173 + -3.3 1,033,173 + -1.3 1,033,265 + -3.9 1,033,639 + -3.0 1,033,831 + -4.6 1,033,899 + -1.2
Or see this region's nucleotide sequence