Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05375

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05365 and MMP_RS05370 are separated by 417 nucleotidesMMP_RS05370 and MMP_RS05375 are separated by 33 nucleotidesMMP_RS05375 and MMP_RS05380 are separated by 52 nucleotidesMMP_RS05380 and MMP_RS05385 are separated by 60 nucleotides MMP_RS05365: MMP_RS05365 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 1,030,514 to 1,030,993 _RS05365 MMP_RS05370: MMP_RS05370 - hypothetical protein, at 1,031,411 to 1,031,719 _RS05370 MMP_RS05375: MMP_RS05375 - V-type ATP synthase subunit I, at 1,031,753 to 1,033,813 _RS05375 MMP_RS05380: MMP_RS05380 - ATP synthase subunit K, at 1,033,866 to 1,034,534 _RS05380 MMP_RS05385: MMP_RS05385 - ATP synthase subunit E, at 1,034,595 to 1,035,206 _RS05385 Position (kb) 1031 1032 1033 1034Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1030.822 kb on + strand, within MMP_RS05365at 1030.939 kb on + strand, within MMP_RS05365at 1030.988 kb on + strandat 1031.128 kb on + strandat 1031.129 kb on - strandat 1031.130 kb on + strandat 1031.132 kb on - strandat 1031.140 kb on - strandat 1031.141 kb on + strandat 1031.227 kb on - strandat 1031.227 kb on - strandat 1031.269 kb on - strandat 1031.269 kb on - strandat 1031.270 kb on + strandat 1031.270 kb on + strandat 1031.270 kb on + strandat 1031.273 kb on - strandat 1031.323 kb on + strandat 1031.323 kb on + strandat 1031.349 kb on - strandat 1031.358 kb on + strandat 1031.368 kb on + strandat 1031.422 kb on + strandat 1031.422 kb on + strandat 1031.896 kb on - strandat 1031.922 kb on + strandat 1031.960 kb on + strandat 1032.197 kb on - strandat 1032.251 kb on - strandat 1032.251 kb on - strandat 1032.251 kb on - strandat 1032.252 kb on + strandat 1032.284 kb on + strandat 1033.023 kb on - strandat 1033.099 kb on - strandat 1033.128 kb on + strandat 1033.173 kb on + strandat 1033.173 kb on + strandat 1033.173 kb on + strandat 1033.265 kb on + strandat 1033.639 kb on + strandat 1033.831 kb on + strandat 1033.899 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,030,822 + MMP_RS05365 0.64 +0.8
1,030,939 + MMP_RS05365 0.89 +0.9
1,030,988 + +0.1
1,031,128 + +0.4
1,031,129 - -0.4
1,031,130 + -0.3
1,031,132 - -1.7
1,031,140 - -2.1
1,031,141 + -0.8
1,031,227 - +0.2
1,031,227 - -0.2
1,031,269 - -0.1
1,031,269 - -0.8
1,031,270 + -1.2
1,031,270 + -0.2
1,031,270 + -0.4
1,031,273 - -0.6
1,031,323 + -2.1
1,031,323 + -1.4
1,031,349 - -1.7
1,031,358 + -4.1
1,031,368 + -2.7
1,031,422 + -4.1
1,031,422 + -1.4
1,031,896 - -3.3
1,031,922 + -3.5
1,031,960 + -3.0
1,032,197 - -2.7
1,032,251 - -2.9
1,032,251 - -1.7
1,032,251 - -3.6
1,032,252 + -3.9
1,032,284 + -3.9
1,033,023 - -4.0
1,033,099 - -3.6
1,033,128 + -3.2
1,033,173 + -3.3
1,033,173 + -3.3
1,033,173 + -1.3
1,033,265 + -3.9
1,033,639 + -3.0
1,033,831 + -4.6
1,033,899 + -1.2

Or see this region's nucleotide sequence