Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05335

Experiment: H2 N-free with 10mM L-Aspartic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05325 and MMP_RS05330 are separated by 115 nucleotidesMMP_RS05330 and MMP_RS05335 are separated by 61 nucleotidesMMP_RS05335 and MMP_RS05340 are separated by 119 nucleotides MMP_RS05325: MMP_RS05325 - hypothetical protein, at 1,021,630 to 1,021,989 _RS05325 MMP_RS05330: MMP_RS05330 - EMC3/TMCO1 family protein, at 1,022,105 to 1,022,701 _RS05330 MMP_RS05335: MMP_RS05335 - adenylate kinase, at 1,022,763 to 1,023,341 _RS05335 MMP_RS05340: MMP_RS05340 - OB-fold nucleic acid binding domain-containing protein, at 1,023,461 to 1,025,389 _RS05340 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1021.789 kb on + strand, within MMP_RS05325at 1021.800 kb on + strand, within MMP_RS05325at 1021.800 kb on + strand, within MMP_RS05325at 1022.027 kb on - strandat 1022.027 kb on - strandat 1022.028 kb on + strandat 1022.107 kb on + strandat 1022.222 kb on - strandat 1022.730 kb on - strandat 1022.759 kb on - strandat 1022.759 kb on - strandat 1023.404 kb on - strandat 1023.418 kb on + strandat 1023.423 kb on - strandat 1023.424 kb on + strandat 1023.427 kb on - strandat 1023.427 kb on - strandat 1023.428 kb on + strandat 1023.463 kb on + strandat 1023.463 kb on + strandat 1023.495 kb on + strandat 1023.530 kb on - strandat 1023.561 kb on - strandat 1023.663 kb on - strandat 1023.670 kb on - strandat 1023.670 kb on - strandat 1023.804 kb on + strandat 1023.815 kb on - strandat 1023.905 kb on - strandat 1023.927 kb on + strandat 1023.998 kb on - strandat 1024.090 kb on - strandat 1024.204 kb on - strandat 1024.279 kb on - strandat 1024.309 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM L-Aspartic Acid
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1,021,789 + MMP_RS05325 0.44 +0.4
1,021,800 + MMP_RS05325 0.47 -0.5
1,021,800 + MMP_RS05325 0.47 -0.5
1,022,027 - -1.6
1,022,027 - +0.7
1,022,028 + -0.2
1,022,107 + -1.4
1,022,222 - -1.1
1,022,730 - -1.6
1,022,759 - -0.3
1,022,759 - -1.7
1,023,404 - -3.9
1,023,418 + +0.9
1,023,423 - -4.2
1,023,424 + -1.7
1,023,427 - -0.3
1,023,427 - -0.2
1,023,428 + +0.6
1,023,463 + +0.6
1,023,463 + -0.2
1,023,495 + -0.7
1,023,530 - -3.4
1,023,561 - -3.5
1,023,663 - -0.7
1,023,670 - -1.7
1,023,670 - -1.1
1,023,804 + -0.8
1,023,815 - -1.1
1,023,905 - -2.6
1,023,927 + -2.9
1,023,998 - -2.7
1,024,090 - -1.8
1,024,204 - -4.4
1,024,279 - -1.1
1,024,309 - -2.9

Or see this region's nucleotide sequence